Non-Coding RNA Search

Ss1.1-rpgl03_f9.5

Sequence:


               
               AGTCACCAGCGGTGCCATGGTCATGGCCGTTGTGCCTGGCAAGACCCAGGGCAGCTGAAA
GTCTTTCTGCACCTGCACCCAGGTGGCAGCCCTGGAGCTTGGGAGTCCTTCAGCTGCCGC
TGTTACTGGGGCTGGGCTGGCCCTACCTGTCAGGAGCCCAGGCCTGAGCTTGGGCCTGAA
GAAGCAACGTAAAGCCAGGAGTCACCTGTCCCGGACCTTCTTGTTCCTGCTGCCAGTTTT
CCAGTCCTGGAGGGAGGACTCTGTCTCACTCTTCTTCTATTTACGTTACAGTCAACTCTC
CCCTCACACACCCCACTTCTCATGGGATCCCTGGGGAGTGGGAGAGGCCAGAGGAAACAC
ACTATATTAAAACTAGAGGCCCTGTGAGCTCACCTGATCCCTGATGACAGGGAAGCAGCC
CCAAGAAAAGTCAATGTTCCAGAAGGTTAGGGTTGCCAGCCTAGGGCTCTGTTCTACACC
TCACTGAGTCCATGGAGAGGTCAGGGACGACTCGTTCAGGGAAAGGTTGGCCCCATGAGC
TTGGCTAAGATGTGTCAGTGCTAAGCTATTGTCTGTATCCTGCTTTCATCATAAAGTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCACCAGCGGTGCCATGGTCATGGCCGTTGTGCCTGGCAAGACCCAGGGCAGCTGAAA
GTCTTTCTGCACCTGCACCCAGGTGGCAGCCCTGGAGCTTGGGAGTCCTTCAGCTGCCGC
TGTTACTGGGGCTGGGCTGGCCCTACCTGTCAGGAGCCCAGGCCTGAGCTTGGGCCTGAA
GAAGCAACGTAAAGCCAGGAGTCACCTGTCCCGGACCTTCTTGTTCCTGCTGCCAGTTTT
CCAGTCCTGGAGGGAGGACTCTGTCTCACTCTTCTTCTATTTACGTTACAGTCAACTCTC
CCCTCACACACCCCACTTCTCATGGGATCCCTGGGGAGTGGGAGAGGCCAGAGGAAACAC
ACTATATTAAAACTAGAGGCCCTGTGAGCTCACCTGATCCCTGATGACAGGGAAGCAGCC
CCAAGAAAAGTCAATGTTCCAGAAGGTTAGGGTTGCCAGCCTAGGGCTCTGTTCTACACC
TCACTGAGTCCATGGAGAGGTCAGGGACGACTCGTTCAGGGAAAGGTTGGCCCCATGAGC
TTGGCTAAGATGTGTCAGTGCTAAGCTATTGTCTGTATCCTGCTTTCATCATAAAGTTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-238, - strand, RNAz p=0.757301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-238, - strand, RNAz p=0.757301

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               131-202, - strand, RNAmicro p=0.948994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               131-202, - strand, RNAmicro p=0.948994

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr22 (38559832-38559224)
               

               
               1-600, gnl|Hg17|chr3 (50305866-50305279)
               

               
               1-600, gnl|Mm7|chr9 (107316107-107316791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr22 (38559832-38559224)
               

               
               1-600, gnl|Hg17|chr3 (50305866-50305279)
               

               
               1-600, gnl|Mm7|chr9 (107316107-107316791)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (0.302389)
               

               
               ton (0.1755)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               ton (0.1755)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	1-600, gnl\|bosTau2\|chr22 (38559832-38559224)
	1-600, gnl\|Hg17\|chr3 (50305866-50305279)
	1-600, gnl\|Mm7\|chr9 (107316107-107316791)