Non-Coding RNA Search

Ss1.1-rpgl03_j11.5

Sequence:


               
               CCCAGCACCAGAGGGGCCTAGAAACCCACTATGGACTTCTTGGCCTCTAATTATAAATTA
CTTTTCAAATAGAAATAGGACAGGAGTTCCTGCTGTGGCTCAAGGGGATCAGCTGCGTCT
CTGGTGCGCCCAGATGCAGGTTTGATTCCCCAGCCCAGAATAGTGGGTTAAGGATCCAGC
GTTGCCCCAGCTGTGGTGTAGGTCACAACTGCATCTTGGATCTGATCCCTGGCCTGGGAA
CTCCATATGCCGCGGGGCAACCAAAAGAGAAAAGAAAAGAAACGGGACAGCTAAGACTCT
ACCTGGCCAGGAAGAGAAGAGGACATTTCAAAAGTAGACAGCTTCTGCCCAGAAGTCTCA
ACCAGGCCTACATACATCCGAATCAAATTACTAAAAATGTTAAAAATAGTGTGTTTTCAT
GGATTCCCAAAGGAATAAGGTCTGTTTTTGGAGAAATGTTAAAATTAGGACTCAGTTTTG
TGTATATTGGGATTAACCCCTTTACTCACCAAATTTTTTACTTATCGTCTGTCCCGTATA
TTTAAAAAGGCCTCCCAGACTCACATGATGATTGCCCAAGACTTAAGAGTTCAAGGTGGG
ACTCAGGAATATTTACAATCCAGTGCAAAAACAATTTCATTCCTCTATGTCCCTAATCTA
CGCCCCTAATCAGCAGGAAGCAGCTAGAGCGGTCGTCGCCCTATTTCCCTTAAGATCGAG
GAATGTACAAAGAAAAGGGGGGAATAGAAACTGCACATAAAATGTTGATCTGCTTTCAAT
GGTTTTGCTTCCTTAAATAGGCTGTTGTTTAATCAAACCTTGAGTTATTTTATAGAGACA
GCATGGCGCGTGTACAAGATGGAAGCCCTGGAGGACCCTGGAACCAAGAATCTTCAAGTC
TTTGGAACTCAGACAATAGAAATGTTGCTGCTGGAGCCCTTCACCAAGCAAGAAGTTCTT
CAGTAAGAAAAACCTGGGAATTCCCTGGTGGCTCAGCAGGTTAAGGATCCAGCATTATCA
CTGCTGTGGTGTGGTTTCCATTTCGGCCCAGGAACTGCTGCCTGCCACAGGCGTGGCCAA
GGAAAAGAAAAATCTGGCTTCTAGCTGCCCAAGTAGCTTGATTCCAATCAGCTTCTGACT
TTTAAGACTAGCCAATCAGTTTCTGCTAAGTTTGAAGCTCCCCTCACCCTTTACCTTTTG
CCCTGAACACTGGATAGGGAGACAGATTTGAGCCCTGCCTCCTGTTTTATTGACTTCCCA
ATAAAACTTGCTTTTTTCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGCACCAGAGGGGCCTAGAAACCCACTATGGACTTCTTGGCCTCTAATTATAAATTA
CTTTTCAAATAGAAATAGGACAGGAGTTCCTGCTGTGGCTCAAGGGGATCAGCTGCGTCT
CTGGTGCGCCCAGATGCAGGTTTGATTCCCCAGCCCAGAATAGTGGGTTAAGGATCCAGC
GTTGCCCCAGCTGTGGTGTAGGTCACAACTGCATCTTGGATCTGATCCCTGGCCTGGGAA
CTCCATATGCCGCGGGGCAACCAAAAGAGAAAAGAAAAGAAACGGGACAGCTAAGACTCT
ACCTGGCCAGGAAGAGAAGAGGACATTTCAAAAGTAGACAGCTTCTGCCCAGAAGTCTCA
ACCAGGCCTACATACATCCGAATCAAATTACTAAAAATGTTAAAAATAGTGTGTTTTCAT
GGATTCCCAAAGGAATAAGGTCTGTTTTTGGAGAAATGTTAAAATTAGGACTCAGTTTTG
TGTATATTGGGATTAACCCCTTTACTCACCAAATTTTTTACTTATCGTCTGTCCCGTATA
TTTAAAAAGGCCTCCCAGACTCACATGATGATTGCCCAAGACTTAAGAGTTCAAGGTGGG
ACTCAGGAATATTTACAATCCAGTGCAAAAACAATTTCATTCCTCTATGTCCCTAATCTA
CGCCCCTAATCAGCAGGAAGCAGCTAGAGCGGTCGTCGCCCTATTTCCCTTAAGATCGAG
GAATGTACAAAGAAAAGGGGGGAATAGAAACTGCACATAAAATGTTGATCTGCTTTCAAT
GGTTTTGCTTCCTTAAATAGGCTGTTGTTTAATCAAACCTTGAGTTATTTTATAGAGACA
GCATGGCGCGTGTACAAGATGGAAGCCCTGGAGGACCCTGGAACCAAGAATCTTCAAGTC
TTTGGAACTCAGACAATAGAAATGTTGCTGCTGGAGCCCTTCACCAAGCAAGAAGTTCTT
CAGTAAGAAAAACCTGGGAATTCCCTGGTGGCTCAGCAGGTTAAGGATCCAGCATTATCA
CTGCTGTGGTGTGGTTTCCATTTCGGCCCAGGAACTGCTGCCTGCCACAGGCGTGGCCAA
GGAAAAGAAAAATCTGGCTTCTAGCTGCCCAAGTAGCTTGATTCCAATCAGCTTCTGACT
TTTAAGACTAGCCAATCAGTTTCTGCTAAGTTTGAAGCTCCCCTCACCCTTTACCTTTTG
CCCTGAACACTGGATAGGGAGACAGATTTGAGCCCTGCCTCCTGTTTTATTGACTTCCCA
ATAAAACTTGCTTTTTTCAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               511-836, gnl|bosTau2|chr2 (56108215-56108529)
               

               
               511-836, gnl|Hg17|chr9 (33679740-33679338)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               511-836, gnl|bosTau2|chr2 (56108215-56108529)
               

               
               511-836, gnl|Hg17|chr9 (33679740-33679338)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               spl (0.429553)
               

               
               amn (0.417711)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               pgl (0.236967)
               

               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	511-836, gnl\|bosTau2\|chr2 (56108215-56108529)
	511-836, gnl\|Hg17\|chr9 (33679740-33679338)

	spl (0.429553)
	amn (0.417711)
	pgl (0.236967)
	cty (0.20816)
	fli (0.202881)
	ill (0.175593)
	nje (0.16592)
	pty (0.142714)
	lnt (0.142308)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	eje (0.0988338)