Non-Coding RNA Search

Ss1.1-rpgl03_k23.5

Sequence:


               
               AGGGGCTGCACCGCAGCATATGGAAGTTCCCAGGCTAGGAGTCAAATTGGAGTTACAGTG
GCCAGCCTACTCCACAGCCACAGCAATGTGAGATCCAAGCTGCATCTGCGACCTAGACCA
CAGCTCACCACGCCAGATCCTTAACCCACGGAGCAAGGCCAGGAGTCGAACCCACATCCT
CATGGATCATGATCATTAACTGCTGAGATGCTAAGGAACTCCCAACACTCAAGTTTTTCA
TTATAAAAATTATTTTTTAAAAATTAAAGTCCAGGCCATTTCTGCAACAAAATTAGCATA
TATCAACAACTCTAACTGCCAACTTATGTCGTATCATAAGGTCATATGAGTAAGTTATCC
AACTTCCAGATAAATGAGTTTAGTGCTGGTGGGTACCCAGGCGAGGCTAGATAAGGCATA
GGGAGGAGCCCTGCCTGTATTTCACCTTGTCTCACAGGAGAGTACACGGAAGGTGCAGCG
CAACATCTTTCACATGTGGCGATACTATAACTTTGCCCGCATGAGAAAAACGGCTGACTT
TTTTCTTCTCCAATCAAACTATAACTATGTGAATTGGTGGTCGACAGCCCAGAGCCTTGT
TATTGTTCTTTCTGGGATCCTGCAGCTGTATTTCTTGAAGCGTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCTGCACCGCAGCATATGGAAGTTCCCAGGCTAGGAGTCAAATTGGAGTTACAGTG
GCCAGCCTACTCCACAGCCACAGCAATGTGAGATCCAAGCTGCATCTGCGACCTAGACCA
CAGCTCACCACGCCAGATCCTTAACCCACGGAGCAAGGCCAGGAGTCGAACCCACATCCT
CATGGATCATGATCATTAACTGCTGAGATGCTAAGGAACTCCCAACACTCAAGTTTTTCA
TTATAAAAATTATTTTTTAAAAATTAAAGTCCAGGCCATTTCTGCAACAAAATTAGCATA
TATCAACAACTCTAACTGCCAACTTATGTCGTATCATAAGGTCATATGAGTAAGTTATCC
AACTTCCAGATAAATGAGTTTAGTGCTGGTGGGTACCCAGGCGAGGCTAGATAAGGCATA
GGGAGGAGCCCTGCCTGTATTTCACCTTGTCTCACAGGAGAGTACACGGAAGGTGCAGCG
CAACATCTTTCACATGTGGCGATACTATAACTTTGCCCGCATGAGAAAAACGGCTGACTT
TTTTCTTCTCCAATCAAACTATAACTATGTGAATTGGTGGTCGACAGCCCAGAGCCTTGT
TATTGTTCTTTCTGGGATCCTGCAGCTGTATTTCTTGAAGCGTCTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               446-563, - strand, RNAz p=0.951907

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               446-563, - strand, RNAz p=0.951907

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               223-648, gnl|bosTau2|chr18 (13848837-13849281)
               

               
               223-648, gnl|Hg17|chr16 (67935574-67934854)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-648, gnl|bosTau2|chr18 (13848837-13849281)
               

               
               223-648, gnl|Hg17|chr16 (67935574-67934854)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

	223-648, gnl\|bosTau2\|chr18 (13848837-13849281)
	223-648, gnl\|Hg17\|chr16 (67935574-67934854)