Non-Coding RNA Search

Ss1.1-rpgl04_g17.5

Sequence:


               
               ATTCTCTGCAATATTCCTGTTCAATCTTCCCCATTTCCAGGTTTATCATGCCAACAGTTG
ATTTTTACAAGCTAGAAGACAATGAATGTATAAGTTCTATGGAACAGTGAGATCAGTGTA
AGCGTCTCGTCTTTGTATTTATAAACCTTAACTTGATGGATGACCTTTTGTATCATGTTG
ATCCTTCGACTTGTACTGAGGTGATTTTAAACTTAAGTATGTAGTGTTTTAATTTCTTCT
GTCCATACGGTTTTAATGAGATGTTTCCATGTTGATTCCATTACAGCCTTGGCTCCTGGC
TTCCAGAAATTTGAGTAGTTGCTCACTTGCCAGTAGTTTTATGTCCCTCATTAGTCACCA
AAATATCAGCACACCAAGATAATATACTACTTGATGTGCCTTCATCTTTCATGTAACTGG
TGAAAATTAATATTCTAATTTCCTGCATATCTGTAAAGAGTCTACCAATTGGCTTCATGG
GAATTTGCAAGCTGAACCAACTCCCTTCTGAGCAGTACACGTGCCTATTTTAAGGATGTT
TCAGTACATGAGTTGTGTTTGTGCACCTGTCTACAGAATTAAGACCATGTACATTTTCTC
ATCTTCCCAATGATGAGAAAAATGTGAAAGTGCATCAGTATGCTTTGGGAAATCATGTTA
AATATAGATGGGGCCTTGGTTTATCTCTTAAATCTTTATATTCAGTTAATTATTATCTTT
GAAAATTCTTTTTCCATTAAAAAATGAAAAGTATTACCATTGAGGTAATAATTTGAGAAA
AAAATTAAGTACCTTAAAATCCTCTCCCTTGTATAAATTATATTGATTTTTATTGATTTC
TAAGTTTCTCTAAAGACTTCTGCTTAAGTAATCTTCACATTATTTAAATTAAATGGTTGT
ATGAATAGCAAGTAATGACTAGAATTAGATAAGAAAGCATACATATCAGTATTAATGATG
TCAAGGATTCGAGTCCTTGCCTCTGTAGGTGGACATAAGTGAAGCTTTTCTACTTCAGTT
TTATTTTCCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTCTGCAATATTCCTGTTCAATCTTCCCCATTTCCAGGTTTATCATGCCAACAGTTG
ATTTTTACAAGCTAGAAGACAATGAATGTATAAGTTCTATGGAACAGTGAGATCAGTGTA
AGCGTCTCGTCTTTGTATTTATAAACCTTAACTTGATGGATGACCTTTTGTATCATGTTG
ATCCTTCGACTTGTACTGAGGTGATTTTAAACTTAAGTATGTAGTGTTTTAATTTCTTCT
GTCCATACGGTTTTAATGAGATGTTTCCATGTTGATTCCATTACAGCCTTGGCTCCTGGC
TTCCAGAAATTTGAGTAGTTGCTCACTTGCCAGTAGTTTTATGTCCCTCATTAGTCACCA
AAATATCAGCACACCAAGATAATATACTACTTGATGTGCCTTCATCTTTCATGTAACTGG
TGAAAATTAATATTCTAATTTCCTGCATATCTGTAAAGAGTCTACCAATTGGCTTCATGG
GAATTTGCAAGCTGAACCAACTCCCTTCTGAGCAGTACACGTGCCTATTTTAAGGATGTT
TCAGTACATGAGTTGTGTTTGTGCACCTGTCTACAGAATTAAGACCATGTACATTTTCTC
ATCTTCCCAATGATGAGAAAAATGTGAAAGTGCATCAGTATGCTTTGGGAAATCATGTTA
AATATAGATGGGGCCTTGGTTTATCTCTTAAATCTTTATATTCAGTTAATTATTATCTTT
GAAAATTCTTTTTCCATTAAAAAATGAAAAGTATTACCATTGAGGTAATAATTTGAGAAA
AAAATTAAGTACCTTAAAATCCTCTCCCTTGTATAAATTATATTGATTTTTATTGATTTC
TAAGTTTCTCTAAAGACTTCTGCTTAAGTAATCTTCACATTATTTAAATTAAATGGTTGT
ATGAATAGCAAGTAATGACTAGAATTAGATAAGAAAGCATACATATCAGTATTAATGATG
TCAAGGATTCGAGTCCTTGCCTCTGTAGGTGGACATAAGTGAAGCTTTTCTACTTCAGTT
TTATTTTCCATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               507-626, - strand, RNAz p=0.838877

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-626, - strand, RNAz p=0.838877

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1031, gnl|bosTau2|chr9 (44805282-44806308)
               

               
               1-1031, gnl|Hg17|chr6 (138705244-138706321)
               

               
               1-1031, gnl|Mm7|chr10 (18307204-18305992)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1031, gnl|bosTau2|chr9 (44805282-44806308)
               

               
               1-1031, gnl|Hg17|chr6 (138705244-138706321)
               

               
               1-1031, gnl|Mm7|chr10 (18307204-18305992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.236967)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               ret (0.128733)

	1-1031, gnl\|bosTau2\|chr9 (44805282-44806308)
	1-1031, gnl\|Hg17\|chr6 (138705244-138706321)
	1-1031, gnl\|Mm7\|chr10 (18307204-18305992)