Ss1.1-rpgl04_i23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGAGAGCAAGCGAGCCAGCAGGAGGTGGTTCGCCTACCCGAGCGGAGCAATGCCTAAGT CAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGCGATTCTGACAGTGAAGTTGACAAAA AGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAGCAAAAGACTGGTG AAACTTCAAGAGCACTGTCGTCCTCCAAGCAGAGCAGCAGCAGCAGAGATGATAACATGT TTCAGATTGGGAAAATGAGGTATGTCAGTGTTCGGGACTTTAAAGGGAAAGTCTTAATTG ATATTAGAGAATATTGGATGGATCCAGAAGGTGAAATGAAACCAGGAAGAAAAGGTATTT CTTTAAATCCTGAGCAGTGGAGCCAGCTGAAAGAACAGATATCTGACATTGATGATGCAG TAAGAAAACTGTAAAATCAGAGCCATATTAAAACTTGTACTGTCCTAGTTGTTTTATCTG TCTTTCTACATTGGCTTTTGTTTTCTAAATGTTGTTTTCCAAGCTATTGTATATTTGGAT TGCAGAACAGTTTGTAAGATGAATACTTTTTTTTTTAATGTGCATTATTTAAAAATGTTC TGAGTGGAGCTAATTGTCAGTTTTATTAAGGAGGATGCTTTTGTGTCTTACCACCTGGTG TGAAATAAAATCAAGTAATACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGAGAGCAAGCGAGCCAGCAGGAGGTGGTTCGCCTACCCGAGCGGAGCAATGCCTAAGT CAAAGGAACTTGTTTCTTCAAGCTCTTCTGGCAGCGATTCTGACAGTGAAGTTGACAAAA AGTTAAAGAGGAAAAAGCAAGTTGCTCCAGAAAAACCTGTAAAGAAGCAAAAGACTGGTG AAACTTCAAGAGCACTGTCGTCCTCCAAGCAGAGCAGCAGCAGCAGAGATGATAACATGT TTCAGATTGGGAAAATGAGGTATGTCAGTGTTCGGGACTTTAAAGGGAAAGTCTTAATTG ATATTAGAGAATATTGGATGGATCCAGAAGGTGAAATGAAACCAGGAAGAAAAGGTATTT CTTTAAATCCTGAGCAGTGGAGCCAGCTGAAAGAACAGATATCTGACATTGATGATGCAG TAAGAAAACTGTAAAATCAGAGCCATATTAAAACTTGTACTGTCCTAGTTGTTTTATCTG TCTTTCTACATTGGCTTTTGTTTTCTAAATGTTGTTTTCCAAGCTATTGTATATTTGGAT TGCAGAACAGTTTGTAAGATGAATACTTTTTTTTTTAATGTGCATTATTTAAAAATGTTC TGAGTGGAGCTAATTGTCAGTTTTATTAAGGAGGATGCTTTTGTGTCTTACCACCTGGTG TGAAATAAAATCAAGTAATACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 120-238, - strand, RNAz p=0.564424 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-238, - strand, RNAz p=0.564424 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 120-245, gnl|bosTau2|chr20 (26532032-26532157) | |
| 120-245, gnl|canFam2|chr4 (78146271-78146143) | |
| 120-245, gnl|canFam2|chr8 (50148611-50148751) | |
| 120-245, gnl|canFam2|chr8 (50148715-50148608) | |
| 120-245, gnl|danRer3|chrUn (9183619-9183828) | |
| 120-245, gnl|danRer3|chrUn (9183713-9183619) | |
| 120-245, gnl|danRer3|chrUn (9183614-9183735) | |
| 120-245, gnl|dasNov1|scaffold_15966 (29687-29549) | |
| 120-245, gnl|dasNov1|scaffold_15966 (29583-29690) | |
| 120-245, gnl|dasNov1|scaffold_26340 (3850-3703) | |
| 120-245, gnl|echTel1|scaffold_236914 (6528-6687) | |
| 120-245, gnl|echTel1|scaffold_296031 (2786-2652) | |
| 120-245, gnl|echTel1|scaffold_312729 (53271-53367) | |
| 120-245, gnl|fr1|chrUn (229316436-229316536) | |
| 120-245, gnl|fr1|chrUn (229316539-229316408) | |
| 120-245, gnl|galGal2|chrZ_random (9059923-9060063) | |
| 120-245, gnl|galGal2|chrZ_random (9060024-9059923) | |
| 120-245, gnl|galGal2|chrZ_random (9059919-9060045) | |
| 120-245, gnl|hg17|chr14 (73841954-73842121) | |
| 120-245, gnl|hg17|chr16 (4553019-4553125) | |
| 120-245, gnl|hg17|chr5 (32627425-32627584) | |
| 120-245, gnl|Hg17|chr5 (32627423-32627548) | |
| 120-245, gnl|loxAfr1|scaffold_20473 (16596-16460) | |
| 120-245, gnl|loxAfr1|scaffold_20473 (16492-16599) | |
| 120-245, gnl|loxAfr1|scaffold_57388 (4271-4131) | |
| 120-245, gnl|mm7|chr15 (12050668-12050534) | |
| 120-245, gnl|Mm7|chr15 (12050668-12050543) | |
| 120-245, gnl|mm7|chr5 (93183124-93183264) | |
| 120-245, gnl|mm7|chr5 (93183228-93183121) | |
| 120-245, gnl|monDom2|scaffold_0 (131033811-131033964) | |
| 120-245, gnl|monDom2|scaffold_0 (131033912-131033808) | |
| 120-245, gnl|monDom2|scaffold_20 (40358119-40357973) | |
| 120-245, gnl|oryCun1|scaffold_130290 (3891-4013) | |
| 120-245, gnl|oryCun1|scaffold_172922 (9822-9700) | |
| 120-245, gnl|oryCun1|scaffold_172922 (9727-9825) | |
| 120-245, gnl|panTro1|chr15 (73900087-73900258) | |
| 120-245, gnl|panTro1|chr18 (4489628-4489734) | |
| 120-245, gnl|panTro1|chr4 (97949230-97949386) | |
| 120-245, gnl|rheMac2|chr20 (22036543-22036442) | |
| 120-245, gnl|rheMac2|chr6 (32687916-32688070) | |
| 120-245, gnl|rheMac2|chr7 (137416548-137416715) | |
| 120-245, gnl|rn3|chr2 (201104492-201104354) | |
| 120-245, gnl|rn3|chr2 (201104388-201104495) | |
| 120-245, gnl|rn3|chr2 (61353602-61353466) | |
| 120-245, gnl|tetNig1|chrUn_random (20207161-20207040) | |
| 120-245, gnl|xenTro1|scaffold_206 (1661308-1661397) | |
| 120-245, gnl|xenTro1|scaffold_206 (1663730-1663598) | |
| 353-684, gnl|bosTau2|chr20 (26545992-26546321) | |
| 353-684, gnl|Hg17|chr5 (32636866-32637191) | |
| 353-684, gnl|Mm7|chr15 (12044392-12044073) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-245, gnl|bosTau2|chr20 (26532032-26532157) | |
| 120-245, gnl|canFam2|chr4 (78146271-78146143) | |
| 120-245, gnl|canFam2|chr8 (50148611-50148751) | |
| 120-245, gnl|canFam2|chr8 (50148715-50148608) | |
| 120-245, gnl|danRer3|chrUn (9183619-9183828) | |
| 120-245, gnl|danRer3|chrUn (9183713-9183619) | |
| 120-245, gnl|danRer3|chrUn (9183614-9183735) | |
| 120-245, gnl|dasNov1|scaffold_15966 (29687-29549) | |
| 120-245, gnl|dasNov1|scaffold_15966 (29583-29690) | |
| 120-245, gnl|dasNov1|scaffold_26340 (3850-3703) | |
| 120-245, gnl|echTel1|scaffold_236914 (6528-6687) | |
| 120-245, gnl|echTel1|scaffold_296031 (2786-2652) | |
| 120-245, gnl|echTel1|scaffold_312729 (53271-53367) | |
| 120-245, gnl|fr1|chrUn (229316436-229316536) | |
| 120-245, gnl|fr1|chrUn (229316539-229316408) | |
| 120-245, gnl|galGal2|chrZ_random (9059923-9060063) | |
| 120-245, gnl|galGal2|chrZ_random (9060024-9059923) | |
| 120-245, gnl|galGal2|chrZ_random (9059919-9060045) | |
| 120-245, gnl|hg17|chr14 (73841954-73842121) | |
| 120-245, gnl|hg17|chr16 (4553019-4553125) | |
| 120-245, gnl|hg17|chr5 (32627425-32627584) | |
| 120-245, gnl|Hg17|chr5 (32627423-32627548) | |
| 120-245, gnl|loxAfr1|scaffold_20473 (16596-16460) | |
| 120-245, gnl|loxAfr1|scaffold_20473 (16492-16599) | |
| 120-245, gnl|loxAfr1|scaffold_57388 (4271-4131) | |
| 120-245, gnl|mm7|chr15 (12050668-12050534) | |
| 120-245, gnl|Mm7|chr15 (12050668-12050543) | |
| 120-245, gnl|mm7|chr5 (93183124-93183264) | |
| 120-245, gnl|mm7|chr5 (93183228-93183121) | |
| 120-245, gnl|monDom2|scaffold_0 (131033811-131033964) | |
| 120-245, gnl|monDom2|scaffold_0 (131033912-131033808) | |
| 120-245, gnl|monDom2|scaffold_20 (40358119-40357973) | |
| 120-245, gnl|oryCun1|scaffold_130290 (3891-4013) | |
| 120-245, gnl|oryCun1|scaffold_172922 (9822-9700) | |
| 120-245, gnl|oryCun1|scaffold_172922 (9727-9825) | |
| 120-245, gnl|panTro1|chr15 (73900087-73900258) | |
| 120-245, gnl|panTro1|chr18 (4489628-4489734) | |
| 120-245, gnl|panTro1|chr4 (97949230-97949386) | |
| 120-245, gnl|rheMac2|chr20 (22036543-22036442) | |
| 120-245, gnl|rheMac2|chr6 (32687916-32688070) | |
| 120-245, gnl|rheMac2|chr7 (137416548-137416715) | |
| 120-245, gnl|rn3|chr2 (201104492-201104354) | |
| 120-245, gnl|rn3|chr2 (201104388-201104495) | |
| 120-245, gnl|rn3|chr2 (61353602-61353466) | |
| 120-245, gnl|tetNig1|chrUn_random (20207161-20207040) | |
| 120-245, gnl|xenTro1|scaffold_206 (1661308-1661397) | |
| 120-245, gnl|xenTro1|scaffold_206 (1663730-1663598) | |
| 353-684, gnl|bosTau2|chr20 (26545992-26546321) | |
| 353-684, gnl|Hg17|chr5 (32636866-32637191) | |
| 353-684, gnl|Mm7|chr15 (12044392-12044073) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| thg (1.90186) | |
| sug (1.52749) | |
| mgp (1.38408) | |
| fat (1.17942) | |
| tes (1.03907) | |
| ski (1.02715) | |
| ste (0.946458) | |
| kid (0.908147) | |
| ova (0.903926) | |
| lin (0.873617) | |
| bfe (0.749288) | |
| sin (0.69979) | |
| nms (0.641574) | |
| tra (0.61546) | |
| sme (0.610874) | |
| isp (0.601504) | |
| col (0.585023) | |
| csk (0.562984) | |
| nca (0.547495) | |
| rec (0.519211) | |
| ret (0.514933) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| ldo (0.485013) | |
| spc (0.453463) | |
| ssp (0.406559) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cje (0.330469) | |
| mga (0.32041) | |
| fco (0.314416) | |
| lun (0.300978) | |
| cte (0.29274) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| cty (0.20816) | |
| hea (0.204499) | |
| jej (0.197844) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (1.90186) | |
| sug (1.52749) | |
| mgp (1.38408) | |
| fat (1.17942) | |
| tes (1.03907) | |
| ski (1.02715) | |
| ste (0.946458) | |
| kid (0.908147) | |
| ova (0.903926) | |
| lin (0.873617) | |
| bfe (0.749288) | |
| sin (0.69979) | |
| nms (0.641574) | |
| tra (0.61546) | |
| sme (0.610874) | |
| isp (0.601504) | |
| col (0.585023) | |
| csk (0.562984) | |
| nca (0.547495) | |
| rec (0.519211) | |
| ret (0.514933) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| ldo (0.485013) | |
| spc (0.453463) | |
| ssp (0.406559) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| gul (0.355177) | |
| cut (0.339847) | |
| nje (0.33184) | |
| cje (0.330469) | |
| mga (0.32041) | |
| fco (0.314416) | |
| lun (0.300978) | |
| cte (0.29274) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| ese (0.253004) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| med (0.232504) | |
| cty (0.20816) | |
| hea (0.204499) | |
| jej (0.197844) | |
| eje (0.197668) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) |