Non-Coding RNA Search

Ss1.1-rpgl05_a1.5

Sequence:


               
               GTTTTCAAGTATTTGGACAAATCTCATAGTACTTGTGATAAAACTGTCGTCACTGGGTTT
GAGTTTTTGGTACCTGTGGCTGGATCATGCAGGCCACTTTGTCTCAATAGTTGAACACTG
GTTCTGTTGCTTTTGTTGTATAAGAGACCTCTATACCTACTCATATCAAACCTTGGTTTC
TGTGTATTTATTCTGAGCCTTTCAAACACAGTTAGTTCATTAGTTTACTCCATCTGTTTA
TTCCACAAATGGATCTGCCCTGGGTGCTGGTGTATAACTGTGAGCAAACCTAAACAGCCC
ATCTCGTGGACACATACATTTTATTTGAAGAGGTAGACGCTAAACCACTGATTGCCATTA
TTTAATTGTAACTGTGGTAAGTCCAACAAGGGAGAAGTATTAGGCGGTAAGAGAGTATCT
AAGCAGCAGATCTAACCGAGGGGCCAGGGAATAGGAGAAATCAACTCCTGGCAAGGGCCT
GGTAGAGCAGTGGACAGACCCTGGCTAACAGTTCACCAGTACATGTCCTGACATCCAGAG
GTGGAGGTGGGACAGGGGTGTGCTGATCATGGTTGATATCTAGCATTTGCCAGGAAGACC
AGATGAGTCTGAATAGCCCTTGCCCTGCCCACTACATACCCCTTAACCTCCAGGCATCAG
GTCAGCAGTCCACGACCTTCAGATGGTAGCTCCTGACCAGTGACTTCTGAGAGGAACAGG
TGCCCACAGCCTAATTTCCTGGCACATGGCAAGTGAGGAACATTTCAGGACATCTCTGTT
TCTACAAGGAAGTTGTCACCCCTTCAGCTTGAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCAAGTATTTGGACAAATCTCATAGTACTTGTGATAAAACTGTCGTCACTGGGTTT
GAGTTTTTGGTACCTGTGGCTGGATCATGCAGGCCACTTTGTCTCAATAGTTGAACACTG
GTTCTGTTGCTTTTGTTGTATAAGAGACCTCTATACCTACTCATATCAAACCTTGGTTTC
TGTGTATTTATTCTGAGCCTTTCAAACACAGTTAGTTCATTAGTTTACTCCATCTGTTTA
TTCCACAAATGGATCTGCCCTGGGTGCTGGTGTATAACTGTGAGCAAACCTAAACAGCCC
ATCTCGTGGACACATACATTTTATTTGAAGAGGTAGACGCTAAACCACTGATTGCCATTA
TTTAATTGTAACTGTGGTAAGTCCAACAAGGGAGAAGTATTAGGCGGTAAGAGAGTATCT
AAGCAGCAGATCTAACCGAGGGGCCAGGGAATAGGAGAAATCAACTCCTGGCAAGGGCCT
GGTAGAGCAGTGGACAGACCCTGGCTAACAGTTCACCAGTACATGTCCTGACATCCAGAG
GTGGAGGTGGGACAGGGGTGTGCTGATCATGGTTGATATCTAGCATTTGCCAGGAAGACC
AGATGAGTCTGAATAGCCCTTGCCCTGCCCACTACATACCCCTTAACCTCCAGGCATCAG
GTCAGCAGTCCACGACCTTCAGATGGTAGCTCCTGACCAGTGACTTCTGAGAGGAACAGG
TGCCCACAGCCTAATTTCCTGGCACATGGCAAGTGAGGAACATTTCAGGACATCTCTGTT
TCTACAAGGAAGTTGTCACCCCTTCAGCTTGAGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               497-614, + strand, RNAz p=0.940218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               497-614, + strand, RNAz p=0.940218

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-816, gnl|bosTau2|chr26 (24131690-24130881)
               

               
               1-816, gnl|Hg17|chr10 (118637533-118636789)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-816, gnl|bosTau2|chr26 (24131690-24130881)
               

               
               1-816, gnl|Hg17|chr10 (118637533-118636789)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pro (0.512033)
               

               
               pgl (0.236967)
               

               
               fat (0.147427)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               pgl (0.236967)
               

               
               fat (0.147427)

	1-816, gnl\|bosTau2\|chr26 (24131690-24130881)
	1-816, gnl\|Hg17\|chr10 (118637533-118636789)