Non-Coding RNA Search

Ss1.1-rpgl05_e4.5

Sequence:


               
               GGACCCCAGAGAATGCCACCCTCTGAGAGAAGCCCTTTGCGGGAGACTGTGGCCCCTCCC
TCTTTCACTGCCCATCAGTATTTTATTGGTTTGTTAATGCATTTATGTCAGTTCAACCAT
AGTATTTAATATGATTTGTGTTTTCTTATTTATTTAGCTGATATGTCTTGATTCGCTTTT
TTTTCGAATGATAATTTCCGCATGGTCTCTCCTGTAAGTCACCTTCTGACTGTTACAGAC
TTTCTACCTCTACCAATCTGCTGTTTCCTTGTTTCTTAACAGGATTTCACAGTGTTGGCG
TCCAGTGTAACTTAGACAATAAAGGGTTTGGTTGTCTACACTGCAGCTTCTCCTGGTTGT
CTACACTGCAGTTTCTCTGTGTGGCGCCCTACCCCCACCTACGCCCTCCCTTCCCTGCTC
ACACCTCTTATTCATTGTCGCGCTCAAATAATACAGATAATGAGCTTATAGAAATCTTTC
AGGTTATTCACTCATATTCCTTAATTTGAAGAATGAACATTGAAATGCTCTAAAAAAAAA
TCAGCTGTTTAGCATCTAAACCCGGTCATTGTCCACTGCTCTGTCACTTCTCTTACCTGG
TTCCTGCAAGGGCTTAGGGTGATCTCAGAGGCTACCTTTCACCTGGGTGATTTACAACAC
AATACTGATTTGCAAGCCAAACCGGATTTTTGCCTTTTTAGGAAAAGTATTCAGTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCCCAGAGAATGCCACCCTCTGAGAGAAGCCCTTTGCGGGAGACTGTGGCCCCTCCC
TCTTTCACTGCCCATCAGTATTTTATTGGTTTGTTAATGCATTTATGTCAGTTCAACCAT
AGTATTTAATATGATTTGTGTTTTCTTATTTATTTAGCTGATATGTCTTGATTCGCTTTT
TTTTCGAATGATAATTTCCGCATGGTCTCTCCTGTAAGTCACCTTCTGACTGTTACAGAC
TTTCTACCTCTACCAATCTGCTGTTTCCTTGTTTCTTAACAGGATTTCACAGTGTTGGCG
TCCAGTGTAACTTAGACAATAAAGGGTTTGGTTGTCTACACTGCAGCTTCTCCTGGTTGT
CTACACTGCAGTTTCTCTGTGTGGCGCCCTACCCCCACCTACGCCCTCCCTTCCCTGCTC
ACACCTCTTATTCATTGTCGCGCTCAAATAATACAGATAATGAGCTTATAGAAATCTTTC
AGGTTATTCACTCATATTCCTTAATTTGAAGAATGAACATTGAAATGCTCTAAAAAAAAA
TCAGCTGTTTAGCATCTAAACCCGGTCATTGTCCACTGCTCTGTCACTTCTCTTACCTGG
TTCCTGCAAGGGCTTAGGGTGATCTCAGAGGCTACCTTTCACCTGGGTGATTTACAACAC
AATACTGATTTGCAAGCCAAACCGGATTTTTGCCTTTTTAGGAAAAGTATTCAGTGCTTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-647, gnl|bosTau2|chr24 (2483567-2482947)
               

               
               20-647, gnl|Hg17|chr18 (72200932-72200268)
               

               
               20-647, gnl|Mm7|chr18 (83353071-83353722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-647, gnl|bosTau2|chr24 (2483567-2482947)
               

               
               20-647, gnl|Hg17|chr18 (72200932-72200268)
               

               
               20-647, gnl|Mm7|chr18 (83353071-83353722)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sme (0.305437)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               pgl (0.118483)

	20-647, gnl\|bosTau2\|chr24 (2483567-2482947)
	20-647, gnl\|Hg17\|chr18 (72200932-72200268)
	20-647, gnl\|Mm7\|chr18 (83353071-83353722)