Ss1.1-rpgl05_k13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACAGAGCCTGAACCAGAAGAGAAGAGTACAGAGCAGAGCCATGAATATTGTCTTGGAT CTCCTCTTTCTTCTGATCATCATCATCTACTCCTACTTGGAATCCTTGGTGAAGGTTTTC ATTCCCCGGAGGAGAAAATCTGTAGCTGGGGAGATTGTTCTCGTTACAGGAGCTGGGCAT GGAATAGGCAGGAAGATTGCCTATGAATTTGCAAAGCGGAAGAGCAGATTGGTTCTGTGG GATATTAATAAGCATGGTCTTGAGGAAACTGCAGCTGAATGCAAAAAACTAGGGGCCACG ACACATGCGTTTGTGGTAGACTGCAGTAACAGAGAGGAGATTTACAACTCTGTAAACCAG GTAAAGAAAGAAGTGGGTGATATAACCATCGTGGTGAATAACGCTGGAACGATATATCCA GCTGACCTTCTTAGTACAAAGGACGAAGAGATTACCAAAACTTTTGAGGTCAACATTCTA GGACACTTTTGGATCACAAAAGCCCTTCTTCCAGCGATGATGAGCAGAAACCATGGCCAC GTTGTCACGGTGGCTTCACTGTGTGGTCACGGAGTGATTCCTTATCTTATTCCATATTGT TCCAGCAAATTTGCGGCTGTTGGCTTCCACAGAGCTCTGACAGCAGAACTTGAAGCCGTG GGGAAAACTGGTATCAAAACCTCGTGCCTCTGCCCGGTTTTTGTGAACACCGGGTTCACC AAAAACCCAAGCACCAGACTATGGCCTATACTGGAGACAGATGAAGTTGCAAGAAGCTTG ATAGATGGAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACAGAGCCTGAACCAGAAGAGAAGAGTACAGAGCAGAGCCATGAATATTGTCTTGGAT CTCCTCTTTCTTCTGATCATCATCATCTACTCCTACTTGGAATCCTTGGTGAAGGTTTTC ATTCCCCGGAGGAGAAAATCTGTAGCTGGGGAGATTGTTCTCGTTACAGGAGCTGGGCAT GGAATAGGCAGGAAGATTGCCTATGAATTTGCAAAGCGGAAGAGCAGATTGGTTCTGTGG GATATTAATAAGCATGGTCTTGAGGAAACTGCAGCTGAATGCAAAAAACTAGGGGCCACG ACACATGCGTTTGTGGTAGACTGCAGTAACAGAGAGGAGATTTACAACTCTGTAAACCAG GTAAAGAAAGAAGTGGGTGATATAACCATCGTGGTGAATAACGCTGGAACGATATATCCA GCTGACCTTCTTAGTACAAAGGACGAAGAGATTACCAAAACTTTTGAGGTCAACATTCTA GGACACTTTTGGATCACAAAAGCCCTTCTTCCAGCGATGATGAGCAGAAACCATGGCCAC GTTGTCACGGTGGCTTCACTGTGTGGTCACGGAGTGATTCCTTATCTTATTCCATATTGT TCCAGCAAATTTGCGGCTGTTGGCTTCCACAGAGCTCTGACAGCAGAACTTGAAGCCGTG GGGAAAACTGGTATCAAAACCTCGTGCCTCTGCCCGGTTTTTGTGAACACCGGGTTCACC AAAAACCCAAGCACCAGACTATGGCCTATACTGGAGACAGATGAAGTTGCAAGAAGCTTG ATAGATGGAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-252, + strand, RNAz p=0.978983 | |
| 2-252, + strand, RNAz p=0.99848 | |
| 359-478, + strand, RNAz p=0.554567 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-252, + strand, RNAz p=0.978983 | |
| 2-252, + strand, RNAz p=0.99848 | |
| 359-478, + strand, RNAz p=0.554567 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 2-252, gnl|bosTau2|chr5 (67886680-67886430) | |
| 2-252, gnl|canFam2|chr32 (13773807-13774035) | |
| 2-252, gnl|danRer3|chr2 (4120594-4120804) | |
| 2-252, gnl|dasNov1|scaffold_157291 (1018-798) | |
| 2-252, gnl|echTel1|scaffold_249519 (2632-2412) | |
| 2-252, gnl|hg17|chr4 (88600959-88601179) | |
| 2-252, gnl|Hg17|chr4 (88601212-88600963) | |
| 2-252, gnl|loxAfr1|scaffold_41953 (5754-5974) | |
| 2-252, gnl|mm7|chr5 (103166405-103166621) | |
| 2-252, gnl|Mm7|chr5 (103166628-103166409) | |
| 2-252, gnl|monDom2|scaffold_37 (15722498-15722276) | |
| 2-252, gnl|oryCun1|scaffold_174974 (29133-29353) | |
| 2-252, gnl|panTro1|chr3 (104592185-104592405) | |
| 2-252, gnl|rheMac2|chr5 (80273038-80273258) | |
| 2-252, gnl|rn3|chr14 (6901482-6901262) | |
| 2-252, gnl|tetNig1|chrUn_random (18699210-18699025) | |
| 2-252, gnl|xenTro1|scaffold_380 (35903-36120) | |
| 359-492, gnl|bosTau2|chr5 (67882064-67881931) | |
| 359-492, gnl|Hg17|chr4 (88595556-88595423) | |
| 359-492, gnl|Mm7|chr5 (103160198-103160065) | |
| 599-761, gnl|bosTau2|chr5 (67925318-67925153) | |
| 599-761, gnl|Hg17|chr4 (88635748-88635587) | |
| 599-761, gnl|Mm7|chr5 (103192613-103192439) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-252, gnl|bosTau2|chr5 (67886680-67886430) | |
| 2-252, gnl|canFam2|chr32 (13773807-13774035) | |
| 2-252, gnl|danRer3|chr2 (4120594-4120804) | |
| 2-252, gnl|dasNov1|scaffold_157291 (1018-798) | |
| 2-252, gnl|echTel1|scaffold_249519 (2632-2412) | |
| 2-252, gnl|hg17|chr4 (88600959-88601179) | |
| 2-252, gnl|Hg17|chr4 (88601212-88600963) | |
| 2-252, gnl|loxAfr1|scaffold_41953 (5754-5974) | |
| 2-252, gnl|mm7|chr5 (103166405-103166621) | |
| 2-252, gnl|Mm7|chr5 (103166628-103166409) | |
| 2-252, gnl|monDom2|scaffold_37 (15722498-15722276) | |
| 2-252, gnl|oryCun1|scaffold_174974 (29133-29353) | |
| 2-252, gnl|panTro1|chr3 (104592185-104592405) | |
| 2-252, gnl|rheMac2|chr5 (80273038-80273258) | |
| 2-252, gnl|rn3|chr14 (6901482-6901262) | |
| 2-252, gnl|tetNig1|chrUn_random (18699210-18699025) | |
| 2-252, gnl|xenTro1|scaffold_380 (35903-36120) | |
| 359-492, gnl|bosTau2|chr5 (67882064-67881931) | |
| 359-492, gnl|Hg17|chr4 (88595556-88595423) | |
| 359-492, gnl|Mm7|chr5 (103160198-103160065) | |
| 599-761, gnl|bosTau2|chr5 (67925318-67925153) | |
| 599-761, gnl|Hg17|chr4 (88635748-88635587) | |
| 599-761, gnl|Mm7|chr5 (103192613-103192439) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (1.20391) | |
| cli (0.152812) | |
| pgl (0.118483) |