Ss1.1-rpgl05_o12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGTGCCTGTGGCTTCTGCCCCGCTCAGCGCGCGGCCCGACCCTCGCGGCTCGCTGCT CCAGTTCCACCATGGCTCCCAAAGGTGGCTCCAAGCAACAGTCCGAGGAGGACTTGCTTC TGCAGGATTTCAGCCGCAACCTGTCGGCCAAGTCCTCGGCGCTCTTCTTCGGGAACGCCT TCATCGTGTCCGCCATTCCCATCTGGTTATATTGGCGAATATGGCATATGGACCTTATTC AGTCTGCTGTTCTGTATAGTGTGATGACCCTAGTAAGCACTTACTTGGTAGCCTTTGCAT ACAAAAATGTGAAGTTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAAGATGCTGTTT CCAAAGAAGTAACTCGAAAACTTTCTGAAGCCGATAATAGAAAGATGTCCCGGAAGGAAA AAGATGAAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTACAACATTTT CCATCTTCTATAACAACACCCTATTTCTGGTCTTGGTCATTGTTGCCTCCTTCTTTATAT TGAAGAACTTCAACCCCACAGTGAACTACATTTTGTCCATAAGCGCTTCCTCAGGCCTCA TCGCCCTCCTGTCAACTGGCTCCAAGTAGACGGTGTCAGCTTTGCGTGCACCCTCCCCCC CTCTTTGTATCTATGGGTGGCCTGCGGTATGTGGAAAAGTAGCAGGGTGGTCAGGGTGGG AGACGCACAAGATGTTTTTATAAGTCTGGAGTTTGAGGGTTTGAAAAATCCAACAAGATA TAATTCAGTATTTGTTTATTGGCTCTTTTTTTGGGACAGATTGTTGAAATTAAATGAATT GAAAGGGAAACTCAGAGTGCCAGGACATTTATTAAAAGGAAAAAAAGTGTTGCAATGTGT TATAATCACAAGAGGAGAAAATAACTTGTTTCCTTGATTTGTCAGAGGTCACAGTAACCT GGACTGAGCTGTTATTATTTATAATAGTAGCAAGAAGTTAATAACTGGTTCTATGTGTTC CAAGCACAATATTACAACTTTTTTTTTGCACCATAAATGCCAGAACCAATCCTTTCCCTC TGGGAGATTGAACAGAACCTTCATGTTTGCAAATCTCTGAATTTGTGATTTGAAATAAAG TTAAAACATGGTTTCTCCAACTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGTGCCTGTGGCTTCTGCCCCGCTCAGCGCGCGGCCCGACCCTCGCGGCTCGCTGCT CCAGTTCCACCATGGCTCCCAAAGGTGGCTCCAAGCAACAGTCCGAGGAGGACTTGCTTC TGCAGGATTTCAGCCGCAACCTGTCGGCCAAGTCCTCGGCGCTCTTCTTCGGGAACGCCT TCATCGTGTCCGCCATTCCCATCTGGTTATATTGGCGAATATGGCATATGGACCTTATTC AGTCTGCTGTTCTGTATAGTGTGATGACCCTAGTAAGCACTTACTTGGTAGCCTTTGCAT ACAAAAATGTGAAGTTTGTTCTCAAGCACAAAGTAGCACAGAAGAGGGAAGATGCTGTTT CCAAAGAAGTAACTCGAAAACTTTCTGAAGCCGATAATAGAAAGATGTCCCGGAAGGAAA AAGATGAAAGAATCTTGTGGAAGAAGAATGAAGTTGCTGATTATGAAGCTACAACATTTT CCATCTTCTATAACAACACCCTATTTCTGGTCTTGGTCATTGTTGCCTCCTTCTTTATAT TGAAGAACTTCAACCCCACAGTGAACTACATTTTGTCCATAAGCGCTTCCTCAGGCCTCA TCGCCCTCCTGTCAACTGGCTCCAAGTAGACGGTGTCAGCTTTGCGTGCACCCTCCCCCC CTCTTTGTATCTATGGGTGGCCTGCGGTATGTGGAAAAGTAGCAGGGTGGTCAGGGTGGG AGACGCACAAGATGTTTTTATAAGTCTGGAGTTTGAGGGTTTGAAAAATCCAACAAGATA TAATTCAGTATTTGTTTATTGGCTCTTTTTTTGGGACAGATTGTTGAAATTAAATGAATT GAAAGGGAAACTCAGAGTGCCAGGACATTTATTAAAAGGAAAAAAAGTGTTGCAATGTGT TATAATCACAAGAGGAGAAAATAACTTGTTTCCTTGATTTGTCAGAGGTCACAGTAACCT GGACTGAGCTGTTATTATTTATAATAGTAGCAAGAAGTTAATAACTGGTTCTATGTGTTC CAAGCACAATATTACAACTTTTTTTTTGCACCATAAATGCCAGAACCAATCCTTTCCCTC TGGGAGATTGAACAGAACCTTCATGTTTGCAAATCTCTGAATTTGTGATTTGAAATAAAG TTAAAACATGGTTTCTCCAACTTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 81-200, - strand, RNAz p=0.732589 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-200, - strand, RNAz p=0.732589 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr1 (70652988-70652786) | |
| 1-205, gnl|canFam2|chr23 (53202433-53202577) | |
| 1-205, gnl|danRer3|chr18 (36518630-36518774) | |
| 1-205, gnl|dasNov1|scaffold_5005 (83134-83278) | |
| 1-205, gnl|echTel1|scaffold_312026 (87245-87389) | |
| 1-205, gnl|fr1|chrUn (251550399-251550255) | |
| 1-205, gnl|galGal2|chr9 (22331563-22331413) | |
| 1-205, gnl|hg17|chr3 (157755442-157755586) | |
| 1-205, gnl|Hg17|chr3 (157755651-157755447) | |
| 1-205, gnl|loxAfr1|scaffold_60712 (3423-3279) | |
| 1-205, gnl|mm7|chr3 (65493474-65493616) | |
| 1-205, gnl|Mm7|chr3 (65493656-65493477) | |
| 1-205, gnl|monDom2|scaffold_69 (2148645-2148501) | |
| 1-205, gnl|oryCun1|scaffold_182274 (26127-25983) | |
| 1-205, gnl|panTro1|chr2 (160902333-160902477) | |
| 1-205, gnl|rheMac2|chr2 (131107848-131107704) | |
| 1-205, gnl|xenTro1|scaffold_569 (547979-547825) | |
| 329-430, gnl|bosTau2|chr1 (70647368-70647267) | |
| 329-430, gnl|Hg17|chr3 (157749497-157749396) | |
| 329-430, gnl|Mm7|chr3 (65488906-65488805) | |
| 558-1162, gnl|bosTau2|chr1 (70642361-70641732) | |
| 558-1162, gnl|Hg17|chr3 (157743764-157743167) | |
| 558-1162, gnl|Mm7|chr3 (65483111-65482514) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr1 (70652988-70652786) | |
| 1-205, gnl|canFam2|chr23 (53202433-53202577) | |
| 1-205, gnl|danRer3|chr18 (36518630-36518774) | |
| 1-205, gnl|dasNov1|scaffold_5005 (83134-83278) | |
| 1-205, gnl|echTel1|scaffold_312026 (87245-87389) | |
| 1-205, gnl|fr1|chrUn (251550399-251550255) | |
| 1-205, gnl|galGal2|chr9 (22331563-22331413) | |
| 1-205, gnl|hg17|chr3 (157755442-157755586) | |
| 1-205, gnl|Hg17|chr3 (157755651-157755447) | |
| 1-205, gnl|loxAfr1|scaffold_60712 (3423-3279) | |
| 1-205, gnl|mm7|chr3 (65493474-65493616) | |
| 1-205, gnl|Mm7|chr3 (65493656-65493477) | |
| 1-205, gnl|monDom2|scaffold_69 (2148645-2148501) | |
| 1-205, gnl|oryCun1|scaffold_182274 (26127-25983) | |
| 1-205, gnl|panTro1|chr2 (160902333-160902477) | |
| 1-205, gnl|rheMac2|chr2 (131107848-131107704) | |
| 1-205, gnl|xenTro1|scaffold_569 (547979-547825) | |
| 329-430, gnl|bosTau2|chr1 (70647368-70647267) | |
| 329-430, gnl|Hg17|chr3 (157749497-157749396) | |
| 329-430, gnl|Mm7|chr3 (65488906-65488805) | |
| 558-1162, gnl|bosTau2|chr1 (70642361-70641732) | |
| 558-1162, gnl|Hg17|chr3 (157743764-157743167) | |
| 558-1162, gnl|Mm7|chr3 (65483111-65482514) |
| Expressed library(ies): 75 entry(ies) | More info |
| Expressed library(ies): 75 entry(ies) | Help | Less info |
| tes (1.87032) | |
| pan (1.41576) | |
| cje (1.32188) | |
| fat (1.17942) | |
| cte (1.17096) | |
| cmu (1.11836) | |
| rec (1.03842) | |
| sto (0.899119) | |
| sin (0.874738) | |
| lin (0.873617) | |
| cut (0.849618) | |
| cst (0.840218) | |
| lyg (0.798616) | |
| sug (0.636456) | |
| tra (0.61546) | |
| sme (0.610874) | |
| cag (0.604778) | |
| ski (0.586941) | |
| spl (0.572738) | |
| sag (0.548145) | |
| cov (0.528611) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| lun (0.451467) | |
| isp (0.451128) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| nmm (0.398406) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cli (0.305623) | |
| bfe (0.299715) | |
| csk (0.281492) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ste (0.270416) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| bla (0.248694) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ret (0.128733) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 75 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.87032) | |
| pan (1.41576) | |
| cje (1.32188) | |
| fat (1.17942) | |
| cte (1.17096) | |
| cmu (1.11836) | |
| rec (1.03842) | |
| sto (0.899119) | |
| sin (0.874738) | |
| lin (0.873617) | |
| cut (0.849618) | |
| cst (0.840218) | |
| lyg (0.798616) | |
| sug (0.636456) | |
| tra (0.61546) | |
| sme (0.610874) | |
| cag (0.604778) | |
| ski (0.586941) | |
| spl (0.572738) | |
| sag (0.548145) | |
| cov (0.528611) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| lun (0.451467) | |
| isp (0.451128) | |
| amn (0.417711) | |
| hea (0.408998) | |
| che (0.408942) | |
| ssp (0.406559) | |
| pla (0.401016) | |
| nmm (0.398406) | |
| nbm (0.397298) | |
| jej (0.395687) | |
| kid (0.389206) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| ill (0.351185) | |
| duo (0.345602) | |
| eye (0.341006) | |
| cki (0.330469) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cli (0.305623) | |
| bfe (0.299715) | |
| csk (0.281492) | |
| cga (0.279096) | |
| nca (0.273748) | |
| ste (0.270416) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| bla (0.248694) | |
| eep (0.245128) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| nms (0.213858) | |
| mas (0.210305) | |
| fli (0.202881) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| liv (0.146284) | |
| pty (0.142714) | |
| ret (0.128733) | |
| med (0.116252) | |
| cty (0.10408) | |
| eje (0.0988338) |