Non-Coding RNA Search

Ss1.1-rpgl05_p12.5

Sequence:


               
               TTCTAAGAAGAGGTGGAGGGAGTGGGGCACTCACAAGTTCTTGTCCTTGGGGACCCAGCG
GAGACCATGGTTCTCCAGGACGATAACTGGGGGCACATGAGGCTGGGGCACCAGTTTCTG
ATTATCCAACTGTGTGGACAAGGAAGGGCAGGTAAGGGTTTCAAGGATCCCTCTTCCTAC
TACTTTCTTTCCAACTCCCCACTCTGAAACCCAAGCCTCACCATAATGAGTACTGCGTCA
GGAAAGAATTCTGCAATCCGCCCAGCGATTTTCAAGGCCAGGGGCCCAGGGCTGTGTAGA
GGGAAGATCAGAGTCGTGAGGAGCCTACTGTGGATAGACCCCATCCGTCAGAGCTGGGCC
TCCCAGGTCCCATAGATGTGGTTGCAGCAATGGCGTTTCCCTGTAGCTGGCCTGGGGGGT
ATCAGGCTTACTTGATGCTTCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTAAGAAGAGGTGGAGGGAGTGGGGCACTCACAAGTTCTTGTCCTTGGGGACCCAGCG
GAGACCATGGTTCTCCAGGACGATAACTGGGGGCACATGAGGCTGGGGCACCAGTTTCTG
ATTATCCAACTGTGTGGACAAGGAAGGGCAGGTAAGGGTTTCAAGGATCCCTCTTCCTAC
TACTTTCTTTCCAACTCCCCACTCTGAAACCCAAGCCTCACCATAATGAGTACTGCGTCA
GGAAAGAATTCTGCAATCCGCCCAGCGATTTTCAAGGCCAGGGGCCCAGGGCTGTGTAGA
GGGAAGATCAGAGTCGTGAGGAGCCTACTGTGGATAGACCCCATCCGTCAGAGCTGGGCC
TCCCAGGTCCCATAGATGTGGTTGCAGCAATGGCGTTTCCCTGTAGCTGGCCTGGGGGGT
ATCAGGCTTACTTGATGCTTCACG

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-444, gnl|bosTau2|chr10 (12370689-12370249)
               

               
               1-444, gnl|canFam2|chr8 (7140096-7140425)
               

               
               1-444, gnl|danRer3|chr12 (16985964-16985683)
               

               
               1-444, gnl|dasNov1|scaffold_37422 (14959-15288)
               

               
               1-444, gnl|echTel1|scaffold_321870 (997-1325)
               

               
               1-444, gnl|fr1|chrUn (161131512-161131819)
               

               
               1-444, gnl|hg17|chr14 (23678349-23678679)
               

               
               1-444, gnl|Hg17|chr14 (23678375-23678815)
               

               
               1-444, gnl|mm7|chr14 (50449128-50449444)
               

               
               1-444, gnl|Mm7|chr14 (50449155-50449539)
               

               
               1-444, gnl|monDom2|scaffold_12 (25636933-25636554)
               

               
               1-444, gnl|oryCun1|scaffold_204481 (47435-47760)
               

               
               1-444, gnl|panTro1|chr15 (22578844-22579174)
               

               
               1-444, gnl|rheMac2|chr7 (87032755-87033085)
               

               
               1-444, gnl|rn3|chr15 (33731774-33732090)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr10 (12370689-12370249)
               

               
               1-444, gnl|canFam2|chr8 (7140096-7140425)
               

               
               1-444, gnl|danRer3|chr12 (16985964-16985683)
               

               
               1-444, gnl|dasNov1|scaffold_37422 (14959-15288)
               

               
               1-444, gnl|echTel1|scaffold_321870 (997-1325)
               

               
               1-444, gnl|fr1|chrUn (161131512-161131819)
               

               
               1-444, gnl|hg17|chr14 (23678349-23678679)
               

               
               1-444, gnl|Hg17|chr14 (23678375-23678815)
               

               
               1-444, gnl|mm7|chr14 (50449128-50449444)
               

               
               1-444, gnl|Mm7|chr14 (50449155-50449539)
               

               
               1-444, gnl|monDom2|scaffold_12 (25636933-25636554)
               

               
               1-444, gnl|oryCun1|scaffold_204481 (47435-47760)
               

               
               1-444, gnl|panTro1|chr15 (22578844-22579174)
               

               
               1-444, gnl|rheMac2|chr7 (87032755-87033085)
               

               
               1-444, gnl|rn3|chr15 (33731774-33732090)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.236967)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)

	1-444, gnl\|bosTau2\|chr10 (12370689-12370249)
	1-444, gnl\|canFam2\|chr8 (7140096-7140425)
	1-444, gnl\|danRer3\|chr12 (16985964-16985683)
	1-444, gnl\|dasNov1\|scaffold_37422 (14959-15288)
	1-444, gnl\|echTel1\|scaffold_321870 (997-1325)
	1-444, gnl\|fr1\|chrUn (161131512-161131819)
	1-444, gnl\|hg17\|chr14 (23678349-23678679)
	1-444, gnl\|Hg17\|chr14 (23678375-23678815)
	1-444, gnl\|mm7\|chr14 (50449128-50449444)
	1-444, gnl\|Mm7\|chr14 (50449155-50449539)
	1-444, gnl\|monDom2\|scaffold_12 (25636933-25636554)
	1-444, gnl\|oryCun1\|scaffold_204481 (47435-47760)
	1-444, gnl\|panTro1\|chr15 (22578844-22579174)
	1-444, gnl\|rheMac2\|chr7 (87032755-87033085)
	1-444, gnl\|rn3\|chr15 (33731774-33732090)