Non-Coding RNA Search

Ss1.1-rpgl06_c5.5

Sequence:


               
               GTCATAAAAAGCGCAGAGAAGAAAAATACGAAAAAGAAGTGCATCATGATATCAGGGAAG
ACGTGCCTCCTCCGAAGAGCAGAACGTCCACTGCCAGAAGCTACCTCGGCAGCAACCACT
CGTCCCTGGGATCCATGTCTCCTTCCAACATGGAAGGCTATTCCAAGACTCAGTATAACC
AGGTACCAAGCGAAGACTTTGAACGCGCTCCTCAGAGTCCAACTCTCCCGCTCGCTAAGG
TAGCTGCCCCTAATCTCAGCCGGATGGGAGCGGTGCCTGTGATGATTCCAGCCCAGAGCA
AGGACGGGTCCATAGTATAGAGCCTCTGTACCTTCATCTGTGCTCTCCATGTTCCTTTTC
TCTTCTCAAAGTATCAACACCTATTCTGTTCTGAATTTTGCTACCAGCCTCAAAATATAT
CAAAAAGAAGTTCACCAGAAACGGTAAAAACTCCAGGTTTTGTGCAGTTATATTGAAATA
GTAAAGGCATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATAAAAAGCGCAGAGAAGAAAAATACGAAAAAGAAGTGCATCATGATATCAGGGAAG
ACGTGCCTCCTCCGAAGAGCAGAACGTCCACTGCCAGAAGCTACCTCGGCAGCAACCACT
CGTCCCTGGGATCCATGTCTCCTTCCAACATGGAAGGCTATTCCAAGACTCAGTATAACC
AGGTACCAAGCGAAGACTTTGAACGCGCTCCTCAGAGTCCAACTCTCCCGCTCGCTAAGG
TAGCTGCCCCTAATCTCAGCCGGATGGGAGCGGTGCCTGTGATGATTCCAGCCCAGAGCA
AGGACGGGTCCATAGTATAGAGCCTCTGTACCTTCATCTGTGCTCTCCATGTTCCTTTTC
TCTTCTCAAAGTATCAACACCTATTCTGTTCTGAATTTTGCTACCAGCCTCAAAATATAT
CAAAAAGAAGTTCACCAGAAACGGTAAAAACTCCAGGTTTTGTGCAGTTATATTGAAATA
GTAAAGGCATTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               54-172, - strand, RNAz p=0.977384

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               54-172, - strand, RNAz p=0.977384

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               54-491, gnl|bosTau2|chr1 (11028734-11028309)
               

               
               54-491, gnl|Hg17|chr21 (17859615-17860064)
               

               
               54-491, gnl|Mm7|chr16 (78333341-78333895)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-491, gnl|bosTau2|chr1 (11028734-11028309)
               

               
               54-491, gnl|Hg17|chr21 (17859615-17860064)
               

               
               54-491, gnl|Mm7|chr16 (78333341-78333895)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               pla (0.133672)

	54-491, gnl\|bosTau2\|chr1 (11028734-11028309)
	54-491, gnl\|Hg17\|chr21 (17859615-17860064)
	54-491, gnl\|Mm7\|chr16 (78333341-78333895)