Non-Coding RNA Search

Ss1.1-rpgl06_e21.5

Sequence:


               
               ACACCGACGACACAAACGGCCGATTCCCGGCGGACAGGCCTCAGCAAAACAGACGGTGCG
AGAGGAGGAGGCCCTCCGGCTCGTTGCCCGTCAGTGGGCCAGACAAAGCGAGCTTTTGCT
TTGCAGGCCTGACGCTGGTTTCCAGGCAGGAGTCACTCTCTGGCTTTTGTCACCTTATAG
GCACTTGTCTGCTTTTTTATGCACACGTCTATGTTATCCTCAGAGGGAAGATGATAATAT
ATAAGTAACATGATGAACTCGCCTTTAGATTCTCCTAAGCATTTGCCCTCGCCCTTCACC
GGTTTTGAACCTTTGGGGAAATTGAATATTCGGCAGAGGGGCTCCACCGTTTCCTGAAGG
CTCTTTGGCCATCCATTAAGTTGATGAGCAAGAAGCACAATGGTCTCCTTATACCCAAGC
TTCAGGCCCTGTCCCCAGGCCCCACCGTCCACCTCGCTGAGCCCCCCCATCCTCACGGTC
GATGCGTTGTACATCCCGACAGCGGAGGGCGTCAGAGTCCTTGGTTCTTGAAAGCAGCCG
CCGCGACCTCCCCTCTTCTAGTCAGCCCCCCTCCTGATGCGGCCCTCAGATTATATGGAA
AAAGCCTCACCTCTGGCGGATCCCAGGGGACCCTCAAGGACCCCCAGCTTACAGGAGTCG
GGTGGCATTCAGGTCCCTTTGGAGGCCAAAGTTCTTACATGGGCAGCTGCTGGAGTCAAA
AACTGGGCCTGCTTTCTGGCCATGCAGTCACCCTAGAGAAGTCCCTACATGTACATCCCA
CGTTAATTTATTAAATTTCATTCAGAAAGGAAGGCCTTGTATATGATGAAATATATGTAG
AGTCAGCCTGTCCAATGTGCAAACTGCAAGGCAGTTGAGGTAGTTGGATTAAGAGACTAG
ATGAGGCATAGAATTCTATTGGTATGTGTGCAATTGCATAAATATTAAATTATGTTTCTA
AGTCCATTTTCCTTCCTGGAGCTCCGATTTCATTTGCTATTGCTCTATACTTTATATACC
CAAGGACACCGCCTCAGGGTTGCAAGCTCTTTAAGGAAATTTTATGCATATATCCATGTA
TTGTATAGAAGAATAAAAATGGAGTTTACTTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCGACGACACAAACGGCCGATTCCCGGCGGACAGGCCTCAGCAAAACAGACGGTGCG
AGAGGAGGAGGCCCTCCGGCTCGTTGCCCGTCAGTGGGCCAGACAAAGCGAGCTTTTGCT
TTGCAGGCCTGACGCTGGTTTCCAGGCAGGAGTCACTCTCTGGCTTTTGTCACCTTATAG
GCACTTGTCTGCTTTTTTATGCACACGTCTATGTTATCCTCAGAGGGAAGATGATAATAT
ATAAGTAACATGATGAACTCGCCTTTAGATTCTCCTAAGCATTTGCCCTCGCCCTTCACC
GGTTTTGAACCTTTGGGGAAATTGAATATTCGGCAGAGGGGCTCCACCGTTTCCTGAAGG
CTCTTTGGCCATCCATTAAGTTGATGAGCAAGAAGCACAATGGTCTCCTTATACCCAAGC
TTCAGGCCCTGTCCCCAGGCCCCACCGTCCACCTCGCTGAGCCCCCCCATCCTCACGGTC
GATGCGTTGTACATCCCGACAGCGGAGGGCGTCAGAGTCCTTGGTTCTTGAAAGCAGCCG
CCGCGACCTCCCCTCTTCTAGTCAGCCCCCCTCCTGATGCGGCCCTCAGATTATATGGAA
AAAGCCTCACCTCTGGCGGATCCCAGGGGACCCTCAAGGACCCCCAGCTTACAGGAGTCG
GGTGGCATTCAGGTCCCTTTGGAGGCCAAAGTTCTTACATGGGCAGCTGCTGGAGTCAAA
AACTGGGCCTGCTTTCTGGCCATGCAGTCACCCTAGAGAAGTCCCTACATGTACATCCCA
CGTTAATTTATTAAATTTCATTCAGAAAGGAAGGCCTTGTATATGATGAAATATATGTAG
AGTCAGCCTGTCCAATGTGCAAACTGCAAGGCAGTTGAGGTAGTTGGATTAAGAGACTAG
ATGAGGCATAGAATTCTATTGGTATGTGTGCAATTGCATAAATATTAAATTATGTTTCTA
AGTCCATTTTCCTTCCTGGAGCTCCGATTTCATTTGCTATTGCTCTATACTTTATATACC
CAAGGACACCGCCTCAGGGTTGCAAGCTCTTTAAGGAAATTTTATGCATATATCCATGTA
TTGTATAGAAGAATAAAAATGGAGTTTACTTCAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               573-1116, gnl|bosTau2|chr22 (2670621-2671171)
               

               
               573-1116, gnl|Hg17|chr11 (75530805-75531341)
               

               
               573-1116, gnl|Mm7|chr7 (94919139-94918656)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               573-1116, gnl|bosTau2|chr22 (2670621-2671171)
               

               
               573-1116, gnl|Hg17|chr11 (75530805-75531341)
               

               
               573-1116, gnl|Mm7|chr7 (94919139-94918656)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mgp (0.461361)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	573-1116, gnl\|bosTau2\|chr22 (2670621-2671171)
	573-1116, gnl\|Hg17\|chr11 (75530805-75531341)
	573-1116, gnl\|Mm7\|chr7 (94919139-94918656)

	mgp (0.461361)
	aor (0.195274)
	rec (0.17307)
	ssp (0.13552)
	pla (0.133672)
	bla (0.124347)
	pgl (0.118483)