Non-Coding RNA Search

Ss1.1-rpgl06_l14.5

Sequence:


               
               CTACCTGGAGTCGGGAGACCCTGCTCCTCGTGCCTCTCCCCAATGGCTGACCAGCTCTTT
CAGCGCAAACCCTGGGACCCCGAGCAGCTTCGCCCGGACCCCGACGCTGACTCCGAGGAA
GGCCTGTTTGACAAACCTCCCCCGGAAGAGCCCCCAGCTGTCCGCGGGCCCAAGTCGGCA
TGGGCTGCGGGCCGGAAGGCCAGTCGTCGTAGCGGCTGGAGGGCGCAGGGGGCCCGCTCC
GGGCAGCACCCCAAGGCCGCAGCGCGTCCCCCGCCCCAAGAGGAGGCGTCTCCACTGGAC
GAGGGCTGCTATCTCGACCATTTTCCGCATCTCTCCATCTTTATTTACGCGGCCATTGCC
TTCTCCATCACCTCCTGCATTTTTACCTATATCCATTTACAGCTTGTCTGAGTTGCCAGG
GCAGGACGGGGTGGGCGCAAGGCCGAGAGAGGAAGCAAGGGGAAAAAGGGGGCTCAGCGT
TTTGTGCCTGGAGACGCGCTGCACGCACTCCATCTAGCTTTTGATGCTTGTTTTTTCTCT
GCTTGTTACCGCCTTTGTCTAACTACCCATCAGTAGGAACGTCCAAAGCAGCTGCTGCTA
ACGAAATAAGCGCCTGGGGACCAGGGGAGGAGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACCTGGAGTCGGGAGACCCTGCTCCTCGTGCCTCTCCCCAATGGCTGACCAGCTCTTT
CAGCGCAAACCCTGGGACCCCGAGCAGCTTCGCCCGGACCCCGACGCTGACTCCGAGGAA
GGCCTGTTTGACAAACCTCCCCCGGAAGAGCCCCCAGCTGTCCGCGGGCCCAAGTCGGCA
TGGGCTGCGGGCCGGAAGGCCAGTCGTCGTAGCGGCTGGAGGGCGCAGGGGGCCCGCTCC
GGGCAGCACCCCAAGGCCGCAGCGCGTCCCCCGCCCCAAGAGGAGGCGTCTCCACTGGAC
GAGGGCTGCTATCTCGACCATTTTCCGCATCTCTCCATCTTTATTTACGCGGCCATTGCC
TTCTCCATCACCTCCTGCATTTTTACCTATATCCATTTACAGCTTGTCTGAGTTGCCAGG
GCAGGACGGGGTGGGCGCAAGGCCGAGAGAGGAAGCAAGGGGAAAAAGGGGGCTCAGCGT
TTTGTGCCTGGAGACGCGCTGCACGCACTCCATCTAGCTTTTGATGCTTGTTTTTTCTCT
GCTTGTTACCGCCTTTGTCTAACTACCCATCAGTAGGAACGTCCAAAGCAGCTGCTGCTA
ACGAAATAAGCGCCTGGGGACCAGGGGAGGAGACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6NSQ3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NSQ3_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               58-177, - strand, RNAz p=0.995065
               

               
               218-337, - strand, RNAz p=0.653362

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-177, - strand, RNAz p=0.995065
               

               
               218-337, - strand, RNAz p=0.653362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-633, gnl|bosTau2|chr19 (18592312-18591697)
               

               
               18-633, gnl|Hg17|chr17 (5345024-5344413)
               

               
               18-633, gnl|Mm7|chr11 (71115001-71114403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-633, gnl|bosTau2|chr19 (18592312-18591697)
               

               
               18-633, gnl|Hg17|chr17 (5345024-5344413)
               

               
               18-633, gnl|Mm7|chr11 (71115001-71114403)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               ebs (0.118301)

	58-177, - strand, RNAz p=0.995065
	218-337, - strand, RNAz p=0.653362

	18-633, gnl\|bosTau2\|chr19 (18592312-18591697)
	18-633, gnl\|Hg17\|chr17 (5345024-5344413)
	18-633, gnl\|Mm7\|chr11 (71115001-71114403)