Non-Coding RNA Search

Ss1.1-rpgl07_c11.5

Sequence:


               
               TGTTTTGAAATATATTGATATTTTATTAGTTTTATTCCAGGTAAACACATTAAACTGAAT
GAAAATTACATTGCTCTTGAAGTTAGATAGAAAATTCCAACACATAGGACTTCTGAGGTT
TAGTACAGTAGTTTGTCTTAATGGCCTCATGTATACAGTCACTATAGTCAGTATTACACT
TGCCACACTTACAGCTTATAGCTACAGGGTAGGAGAAATAAGGAGTAACATGATGTGGGC
ATCCTGGTATTTCTACAGTCTTGTACATGAAGTCTCTATATGTACAAACATCCTGAGACA
GAGCATATTTTGGAAGAAACAGCTTGCCATTGAAATCCCGTGTCATACAATATCCAGCAC
AGATGGTAGTGTTGATGGTTAGGCAGTAAGCACACTCTTTCCTTTCGACATGCATCATAT
ACTCAGTTGGAATACAAAAAGACATTGCTTGCCCACATGCAAGGCCAATAAGGTGGATAC
ACATCTTGTCATATGATCAAATGGTTTCGCGAAAACTCAATAATCAGACAACAAGATGTG
CGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACG
ACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTTGAAATATATTGATATTTTATTAGTTTTATTCCAGGTAAACACATTAAACTGAAT
GAAAATTACATTGCTCTTGAAGTTAGATAGAAAATTCCAACACATAGGACTTCTGAGGTT
TAGTACAGTAGTTTGTCTTAATGGCCTCATGTATACAGTCACTATAGTCAGTATTACACT
TGCCACACTTACAGCTTATAGCTACAGGGTAGGAGAAATAAGGAGTAACATGATGTGGGC
ATCCTGGTATTTCTACAGTCTTGTACATGAAGTCTCTATATGTACAAACATCCTGAGACA
GAGCATATTTTGGAAGAAACAGCTTGCCATTGAAATCCCGTGTCATACAATATCCAGCAC
AGATGGTAGTGTTGATGGTTAGGCAGTAAGCACACTCTTTCCTTTCGACATGCATCATAT
ACTCAGTTGGAATACAAAAAGACATTGCTTGCCCACATGCAAGGCCAATAAGGTGGATAC
ACATCTTGTCATATGATCAAATGGTTTCGCGAAAACTCAATAATCAGACAACAAGATGTG
CGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACG
ACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|229563|prf||760571B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|229563|prf||760571B

ncRNA annotation: 2 entry(ies)

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ncRNA annotation: 2 entry(ies)

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               474-543, RF00240;RNA-OUT; (AC148290.3/7621-7690), blast E-value=2e-30
               

               
               543-474, , RaveNnA Score=54.49

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               474-543, RF00240;RNA-OUT; (AC148290.3/7621-7690), blast E-value=2e-30
               

               
               543-474, , RaveNnA Score=54.49

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-338, gnl|bosTau2|chr3 (24268031-24268369)
               

               
               1-338, gnl|Hg17|chr1 (115288965-115288635)
               

               
               1-338, gnl|Mm7|chr3 (102571292-102571617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-338, gnl|bosTau2|chr3 (24268031-24268369)
               

               
               1-338, gnl|Hg17|chr1 (115288965-115288635)
               

               
               1-338, gnl|Mm7|chr3 (102571292-102571617)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.473934)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.473934)
               

               
               jca (0.11396)

	474-543, RF00240;RNA-OUT; (AC148290.3/7621-7690), blast E-value=2e-30
	543-474, , RaveNnA Score=54.49

	1-338, gnl\|bosTau2\|chr3 (24268031-24268369)
	1-338, gnl\|Hg17\|chr1 (115288965-115288635)
	1-338, gnl\|Mm7\|chr3 (102571292-102571617)