Non-Coding RNA Search

Ss1.1-rpgl07_e9.5

Sequence:


               
               TGGCTGGTCACGGCGGCGTCTTACCTGCCGGCGAGGCCCTGCGCTACGCCGAGTACTCGC
CGCCCCAAGCGAAGCGGTCGGACACGGACATCGACCGGGGACTGGCAAGAAGTTTGATAG
CTGTAGGGCTGGGTATTGCAGCTCTTGGATTTGCAGGTCGCTATGCATTTCAGATCTGGA
AACCTCTAGGACAAGTAATCACAGAAACCGCAAAGAAGATTTCAGCTCCTACCTTTTCAT
CCTACTATAAAGGAGGATTTGAACAGAAAATGAGTAGGCGAGAAGCTAGTCTTATTTTGG
GTGTAAGCCCATCTGCCGGCAAGGCTAAGATTAGAGCAGCTCACAGGAGAATCATGATTT
TGAATCACCCAGATAAAGGTGGATCTCCTTACTTAGCAACCAAAATTAATGAAGCAAAAG
ACCTACTAGAAGCAACCACCAAACACTGAGGATGCTCAGGGCCCCCTCTGAAGGAGGAAA
AGGGAGAACCTTATAAAAAATGTCCTGCAGGTTAATCTACACCATGGCCTTCATAATTTT
CATACATGTACTGATGGCAAGCCTTTATTCCACTACTAAGTTATATAATAATAAAAGATG
AACAATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTGGTCACGGCGGCGTCTTACCTGCCGGCGAGGCCCTGCGCTACGCCGAGTACTCGC
CGCCCCAAGCGAAGCGGTCGGACACGGACATCGACCGGGGACTGGCAAGAAGTTTGATAG
CTGTAGGGCTGGGTATTGCAGCTCTTGGATTTGCAGGTCGCTATGCATTTCAGATCTGGA
AACCTCTAGGACAAGTAATCACAGAAACCGCAAAGAAGATTTCAGCTCCTACCTTTTCAT
CCTACTATAAAGGAGGATTTGAACAGAAAATGAGTAGGCGAGAAGCTAGTCTTATTTTGG
GTGTAAGCCCATCTGCCGGCAAGGCTAAGATTAGAGCAGCTCACAGGAGAATCATGATTT
TGAATCACCCAGATAAAGGTGGATCTCCTTACTTAGCAACCAAAATTAATGAAGCAAAAG
ACCTACTAGAAGCAACCACCAAACACTGAGGATGCTCAGGGCCCCCTCTGAAGGAGGAAA
AGGGAGAACCTTATAAAAAATGTCCTGCAGGTTAATCTACACCATGGCCTTCATAATTTT
CATACATGTACTGATGGCAAGCCTTTATTCCACTACTAAGTTATATAATAATAAAAGATG
AACAATCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57103128|ref|XP_534131.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57103128|ref|XP_534131.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               33-607, gnl|bosTau2|chr8 (47062921-47062342)
               

               
               33-607, gnl|Hg17|chr9 (125214578-125213999)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-607, gnl|bosTau2|chr8 (47062921-47062342)
               

               
               33-607, gnl|Hg17|chr9 (125214578-125213999)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               pro (0.512033)
               

               
               sug (0.381874)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               sug (0.381874)
               

               
               spc (0.340097)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	33-607, gnl\|bosTau2\|chr8 (47062921-47062342)
	33-607, gnl\|Hg17\|chr9 (125214578-125213999)

	pro (0.512033)
	sug (0.381874)
	spc (0.340097)
	cki (0.330469)
	sme (0.305437)
	cbe (0.239234)
	hea (0.204499)
	nlu (0.191681)
	sto (0.179824)
	ill (0.175593)
	ton (0.1755)
	sin (0.174948)
	eye (0.170503)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	mga (0.160205)
	bfe (0.149858)
	fat (0.147427)
	ssp (0.13552)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	pgl (0.118483)
	med (0.116252)