Non-Coding RNA Search

Ss1.1-rpgl07_k13.5

Sequence:


               
               TTCCACTGTGCCACAATGGGAACTCTTTCCTTTATAATTTTATCTAAAACATTTCTGAGT
TCCTTGGTAGCCTAGCAGGGTTAGGGGGTTCAAGATCTGGCACTTTCACTGCTGTGGTGC
ATGGGTTTGATCTCTGGCTGAGAACTTCTGCATGCTGCAGGCATGGCCAAAAATAAATAA
AGCAGTCATTTCGTTTATAGCCCACAAATAAACATTTCTGAATATTTATTACAAGTAATT
ATCTTTAGGGAGATTGCTGGTGAGCTTGTTCTGTATGTCTTAATATTTTTTCTTAGGTGC
TGTCTTGCTAAAAGTATGCCTTTTTAGATCACCTTTGTGATCTATGGACTGAAAATTTAG
CAACTGTGGTATAAGAACAGCACAATGTGCAGGTAGAGCTGTTTAATAATTTTTATTTAT
TATTTTTAGACACATGATAGTAAGGAACACTTGGCAATGATGGAAAGGATTCTTGGACCT
TTACCAAAACATATGGTACAGAAAACAAGGTATGTTTTGTTTAAGCATTGAGTTCCATTA
TTAATATACTTGATCATGTGTTCTATATAAAACAATGCTTTATCTCTTTATAGTGATAAT
TATTTTGCTGTGAAGCCAATTACTATATTTTAGGCTGCCTTTTAAATCTCTAGAAAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCACTGTGCCACAATGGGAACTCTTTCCTTTATAATTTTATCTAAAACATTTCTGAGT
TCCTTGGTAGCCTAGCAGGGTTAGGGGGTTCAAGATCTGGCACTTTCACTGCTGTGGTGC
ATGGGTTTGATCTCTGGCTGAGAACTTCTGCATGCTGCAGGCATGGCCAAAAATAAATAA
AGCAGTCATTTCGTTTATAGCCCACAAATAAACATTTCTGAATATTTATTACAAGTAATT
ATCTTTAGGGAGATTGCTGGTGAGCTTGTTCTGTATGTCTTAATATTTTTTCTTAGGTGC
TGTCTTGCTAAAAGTATGCCTTTTTAGATCACCTTTGTGATCTATGGACTGAAAATTTAG
CAACTGTGGTATAAGAACAGCACAATGTGCAGGTAGAGCTGTTTAATAATTTTTATTTAT
TATTTTTAGACACATGATAGTAAGGAACACTTGGCAATGATGGAAAGGATTCTTGGACCT
TTACCAAAACATATGGTACAGAAAACAAGGTATGTTTTGTTTAAGCATTGAGTTCCATTA
TTAATATACTTGATCATGTGTTCTATATAAAACAATGCTTTATCTCTTTATAGTGATAAT
TATTTTGCTGTGAAGCCAATTACTATATTTTAGGCTGCCTTTTAAATCTCTAGAAAGTGT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               210-517, gnl|bosTau2|chr2 (50974051-50974381)
               

               
               210-517, gnl|Mm7|chr1 (58664324-58664028)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-517, gnl|bosTau2|chr2 (50974051-50974381)
               

               
               210-517, gnl|Mm7|chr1 (58664324-58664028)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               aor (0.195274)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	210-517, gnl\|bosTau2\|chr2 (50974051-50974381)
	210-517, gnl\|Mm7\|chr1 (58664324-58664028)

	aor (0.195274)
	nco (0.161734)
	lun (0.150489)
	liv (0.146284)
	ova (0.129132)
	tra (0.123092)
	pgl (0.118483)