Ss1.1-rpgl07_m5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACTGGTGTGAACAACTAACCAGCAAGTGTCCTTTTCTAATTCCGTTTGAAACTAGGC AGCTTTACTTCACATGTACGGCGTTTGGTGCATCCAGAGCAATCGTGTGGTTACAAAACC GACGTGAGGCCACTGTAGAAAGAACAAGGACCACAAGTAGTGTAAGACGAGATGATCCTG GAGAGTTTCGAGTTGGTCGTCTCAAGCATGAAAGAGTGAAAGTTCCACGTGGTGAATCAC TGATGGAGTGGGCTGAGAATGTCATGCAGATACATGCAGATCGGAAATCAGTTCTTGAGG TTGAATTTTTAGGAGAAGAAGGAACTGGCTTGGGTCCCACATTAGAGTTTTATGCTCTGG TGGCAGCAGAATTCCAGAGAACTGACTTAGGAGCTTGGCTTTGTGATGATAACTTTCCAG ATGATGAATCTCGTCATGTTGATCTTGGAGGTGGATTGAAACCTCCTGGGTACTATGTGC AGCGATCATGTGGATTGTTTACAGCTCCATTTCCACAAGATAGTGATGAGCTTGAAAGGA TCACAAAACTCTTTCATTTCCTTGGAATTTTCTTGGCCAAATGCATTCAAGACAATAGAC TTGTGGACTTACCTATTTCTAAACCTTTCTTTAAACTCATGTGTATGGGTGACATTAAAA GCAATATGAGCAAACTGATTTATGAGTCACGCGGTGATAGAGACTTACACTGTACTGAAA GTCAGTCTGAAGCCTCTACAGAAGAAGGACATGATTCACTCTCAGTAGGAAGCTTTGAAG AGGATTCAAAATCAGAGTTTATTCTAGATCCCCCCAAACCAAAACCCCCAGCTTGGTTTA ATGGAATTTTAACTTGGGAAGACTTTGAACTAGTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACTGGTGTGAACAACTAACCAGCAAGTGTCCTTTTCTAATTCCGTTTGAAACTAGGC AGCTTTACTTCACATGTACGGCGTTTGGTGCATCCAGAGCAATCGTGTGGTTACAAAACC GACGTGAGGCCACTGTAGAAAGAACAAGGACCACAAGTAGTGTAAGACGAGATGATCCTG GAGAGTTTCGAGTTGGTCGTCTCAAGCATGAAAGAGTGAAAGTTCCACGTGGTGAATCAC TGATGGAGTGGGCTGAGAATGTCATGCAGATACATGCAGATCGGAAATCAGTTCTTGAGG TTGAATTTTTAGGAGAAGAAGGAACTGGCTTGGGTCCCACATTAGAGTTTTATGCTCTGG TGGCAGCAGAATTCCAGAGAACTGACTTAGGAGCTTGGCTTTGTGATGATAACTTTCCAG ATGATGAATCTCGTCATGTTGATCTTGGAGGTGGATTGAAACCTCCTGGGTACTATGTGC AGCGATCATGTGGATTGTTTACAGCTCCATTTCCACAAGATAGTGATGAGCTTGAAAGGA TCACAAAACTCTTTCATTTCCTTGGAATTTTCTTGGCCAAATGCATTCAAGACAATAGAC TTGTGGACTTACCTATTTCTAAACCTTTCTTTAAACTCATGTGTATGGGTGACATTAAAA GCAATATGAGCAAACTGATTTATGAGTCACGCGGTGATAGAGACTTACACTGTACTGAAA GTCAGTCTGAAGCCTCTACAGAAGAAGGACATGATTCACTCTCAGTAGGAAGCTTTGAAG AGGATTCAAAATCAGAGTTTATTCTAGATCCCCCCAAACCAAAACCCCCAGCTTGGTTTA ATGGAATTTTAACTTGGGAAGACTTTGAACTAGTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 434-539, - strand, RNAz p=0.546489 | |
| 660-819, - strand, RNAz p=0.891911 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 434-539, - strand, RNAz p=0.546489 | |
| 660-819, - strand, RNAz p=0.891911 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 95-301, gnl|bosTau2|chr1 (59511607-59511401) | |
| 95-301, gnl|canFam2|chr8 (13411299-13411519) | |
| 95-301, gnl|danRer3|chrNA (42901147-42901366) | |
| 95-301, gnl|dasNov1|scaffold_64393 (7684-7465) | |
| 95-301, gnl|echTel1|scaffold_301065 (126756-126974) | |
| 95-301, gnl|fr1|chrUn (223705621-223705830) | |
| 95-301, gnl|galGal2|chr5 (31219164-31219373) | |
| 95-301, gnl|hg17|chr14 (30648340-30648560) | |
| 95-301, gnl|Hg17|chr14 (30648558-30648352) | |
| 95-301, gnl|loxAfr1|scaffold_117618 (4334-4553) | |
| 95-301, gnl|mm7|chr12 (49764691-49764915) | |
| 95-301, gnl|Mm7|chr12 (49764913-49764707) | |
| 95-301, gnl|monDom2|scaffold_53 (3724120-3724328) | |
| 95-301, gnl|panTro1|chr15 (29794243-29794463) | |
| 95-301, gnl|rheMac2|chr7 (94064342-94064560) | |
| 95-301, gnl|rn3|chr6 (71853630-71853850) | |
| 95-301, gnl|tetNig1|chrUn_random (83171502-83171295) | |
| 95-301, gnl|xenTro1|scaffold_271 (1169521-1169302) | |
| 434-876, gnl|bosTau2|chr1 (59509636-59509194) | |
| 434-876, gnl|Hg17|chr14 (30646214-30645772) | |
| 434-876, gnl|Mm7|chr12 (49761882-49761426) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-301, gnl|bosTau2|chr1 (59511607-59511401) | |
| 95-301, gnl|canFam2|chr8 (13411299-13411519) | |
| 95-301, gnl|danRer3|chrNA (42901147-42901366) | |
| 95-301, gnl|dasNov1|scaffold_64393 (7684-7465) | |
| 95-301, gnl|echTel1|scaffold_301065 (126756-126974) | |
| 95-301, gnl|fr1|chrUn (223705621-223705830) | |
| 95-301, gnl|galGal2|chr5 (31219164-31219373) | |
| 95-301, gnl|hg17|chr14 (30648340-30648560) | |
| 95-301, gnl|Hg17|chr14 (30648558-30648352) | |
| 95-301, gnl|loxAfr1|scaffold_117618 (4334-4553) | |
| 95-301, gnl|mm7|chr12 (49764691-49764915) | |
| 95-301, gnl|Mm7|chr12 (49764913-49764707) | |
| 95-301, gnl|monDom2|scaffold_53 (3724120-3724328) | |
| 95-301, gnl|panTro1|chr15 (29794243-29794463) | |
| 95-301, gnl|rheMac2|chr7 (94064342-94064560) | |
| 95-301, gnl|rn3|chr6 (71853630-71853850) | |
| 95-301, gnl|tetNig1|chrUn_random (83171502-83171295) | |
| 95-301, gnl|xenTro1|scaffold_271 (1169521-1169302) | |
| 434-876, gnl|bosTau2|chr1 (59509636-59509194) | |
| 434-876, gnl|Hg17|chr14 (30646214-30645772) | |
| 434-876, gnl|Mm7|chr12 (49761882-49761426) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) | |
| cty (0.10408) |