Ss1.1-rpgl08_a9.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTTCAGTCGGGCGGCGGCGGTGGCGGCGGCGGGTGGTGGAGAATGTGGTTCACTCAC GGGCTGGCAGTGGCGCTGGCTCTGAGCGTGCTGCCAGCAAGCCGGGCCCTACGGCCGGGC GACTGTGAAGTTTGTATTTCTTACCTGGGAAGATTTTATCAGGACCTCAAAGACAGAGAT GTCACATTCTCACCAGCCTCTATTGAAAAAGAACTTACAAAGTTCTGCCGTGAAGCCAGA GGCAAAGAGAATCGGTTGTGCTACTACATTGGGGCCACAGATGATGCAGCCACCAAGATC ATCAATGAGGTGTCGAAGCCCCTGGCCCACCACATCCCTGTGGAGAAGATCTGTGAGAAG CTCAAGAAGAAGGACAGCCAGATCTGTGAGCTAAAGTATGACAAGCAGATCGACCTGAGC ACAGTGGACCTGAAGAAGCTCCGAGTTAAAGAGCTAAAGAAGATCCTAGACGACTGGGGG GAGACGTGCAAAGGCTGTGCAGAAAAGTCTGACTACATCCGGAAGATTAATGAACTGATG CCAAAATATGCCCCCAAGGCAGCCAGTTCACGGACTGATTTGTAGTCTGCCCAATCCCTG CTGCACCTGAGGGGAAAAACAGTTCATCTGTGTCTTCCCCAAACAGCCTTTTTGTAATTT ATTTTTTAGGTGGGCTCCTGACAAAGTCAGGTGTGAAGCCTGGAGGAGCTTTCCTGATGA TGCTGAGTCTACAGCGCCCCCTTGGAGGGGATTCACTTTGTTCTGTTGCGGGTTTACACT AGGACTTCCAAGTGTGTCTGGAATTTTTTTATTAAAGGAAGAAAATTTCTAGCTGTCCTT GAAGAATTAAAGAGAATACTGAAATAGGGTTTTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTTCAGTCGGGCGGCGGCGGTGGCGGCGGCGGGTGGTGGAGAATGTGGTTCACTCAC GGGCTGGCAGTGGCGCTGGCTCTGAGCGTGCTGCCAGCAAGCCGGGCCCTACGGCCGGGC GACTGTGAAGTTTGTATTTCTTACCTGGGAAGATTTTATCAGGACCTCAAAGACAGAGAT GTCACATTCTCACCAGCCTCTATTGAAAAAGAACTTACAAAGTTCTGCCGTGAAGCCAGA GGCAAAGAGAATCGGTTGTGCTACTACATTGGGGCCACAGATGATGCAGCCACCAAGATC ATCAATGAGGTGTCGAAGCCCCTGGCCCACCACATCCCTGTGGAGAAGATCTGTGAGAAG CTCAAGAAGAAGGACAGCCAGATCTGTGAGCTAAAGTATGACAAGCAGATCGACCTGAGC ACAGTGGACCTGAAGAAGCTCCGAGTTAAAGAGCTAAAGAAGATCCTAGACGACTGGGGG GAGACGTGCAAAGGCTGTGCAGAAAAGTCTGACTACATCCGGAAGATTAATGAACTGATG CCAAAATATGCCCCCAAGGCAGCCAGTTCACGGACTGATTTGTAGTCTGCCCAATCCCTG CTGCACCTGAGGGGAAAAACAGTTCATCTGTGTCTTCCCCAAACAGCCTTTTTGTAATTT ATTTTTTAGGTGGGCTCCTGACAAAGTCAGGTGTGAAGCCTGGAGGAGCTTTCCTGATGA TGCTGAGTCTACAGCGCCCCCTTGGAGGGGATTCACTTTGTTCTGTTGCGGGTTTACACT AGGACTTCCAAGTGTGTCTGGAATTTTTTTATTAAAGGAAGAAAATTTCTAGCTGTCCTT GAAGAATTAAAGAGAATACTGAAATAGGGTTTTACC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chr22 (37355196-37355325) | |
| 1-130, gnl|Hg17|chr3 (51397755-51397907) | |
| 1-130, gnl|Mm7|chr9 (106621393-106621262) | |
| 258-400, gnl|bosTau2|chr13 (17431092-17431234) | |
| 258-400, gnl|canFam2|chr2 (24642278-24642093) | |
| 258-400, gnl|danRer3|chr4 (9824027-9824194) | |
| 258-400, gnl|dasNov1|scaffold_4065 (106970-106816) | |
| 258-400, gnl|echTel1|scaffold_258742 (7634-7810) | |
| 258-400, gnl|fr1|chrUn (296756402-296756225) | |
| 258-400, gnl|hg17|chr10 (14907478-14907664) | |
| 258-400, gnl|Hg17|chr10 (14907626-14907484) | |
| 258-400, gnl|loxAfr1|scaffold_8789 (19903-19749) | |
| 258-400, gnl|mm7|chr2 (3438437-3438284) | |
| 258-400, gnl|Mm7|chr2 (3438287-3438429) | |
| 258-400, gnl|monDom2|scaffold_30 (14287257-14287447) | |
| 258-400, gnl|oryCun1|scaffold_145581 (5236-5050) | |
| 258-400, gnl|panTro1|chr8 (15375727-15375913) | |
| 258-400, gnl|rheMac2|chr9 (15103222-15103408) | |
| 258-400, gnl|rn3|chr17 (85848259-85848421) | |
| 258-400, gnl|tetNig1|chrUn_random (114259138-114259300) | |
| 258-400, gnl|xenTro1|scaffold_200 (948031-948233) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chr22 (37355196-37355325) | |
| 1-130, gnl|Hg17|chr3 (51397755-51397907) | |
| 1-130, gnl|Mm7|chr9 (106621393-106621262) | |
| 258-400, gnl|bosTau2|chr13 (17431092-17431234) | |
| 258-400, gnl|canFam2|chr2 (24642278-24642093) | |
| 258-400, gnl|danRer3|chr4 (9824027-9824194) | |
| 258-400, gnl|dasNov1|scaffold_4065 (106970-106816) | |
| 258-400, gnl|echTel1|scaffold_258742 (7634-7810) | |
| 258-400, gnl|fr1|chrUn (296756402-296756225) | |
| 258-400, gnl|hg17|chr10 (14907478-14907664) | |
| 258-400, gnl|Hg17|chr10 (14907626-14907484) | |
| 258-400, gnl|loxAfr1|scaffold_8789 (19903-19749) | |
| 258-400, gnl|mm7|chr2 (3438437-3438284) | |
| 258-400, gnl|Mm7|chr2 (3438287-3438429) | |
| 258-400, gnl|monDom2|scaffold_30 (14287257-14287447) | |
| 258-400, gnl|oryCun1|scaffold_145581 (5236-5050) | |
| 258-400, gnl|panTro1|chr8 (15375727-15375913) | |
| 258-400, gnl|rheMac2|chr9 (15103222-15103408) | |
| 258-400, gnl|rn3|chr17 (85848259-85848421) | |
| 258-400, gnl|tetNig1|chrUn_random (114259138-114259300) | |
| 258-400, gnl|xenTro1|scaffold_200 (948031-948233) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| pgl (0.7109) | |
| amn (0.417711) | |
| ute (0.398353) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| duo (0.345602) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| pty (0.285429) | |
| cga (0.279096) | |
| che (0.272628) | |
| fce (0.271592) | |
| ova (0.258264) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.7109) | |
| amn (0.417711) | |
| ute (0.398353) | |
| nlu (0.383362) | |
| nep (0.36785) | |
| duo (0.345602) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| nbm (0.297974) | |
| pty (0.285429) | |
| cga (0.279096) | |
| che (0.272628) | |
| fce (0.271592) | |
| ova (0.258264) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) | |
| eje (0.0988338) |