Ss1.1-rpgl08_d5.5
|
CGCGCGCCCTCTCCCTCCTCCACCGCTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGC
TTGTGTGCTCGTTCGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACT
CCGGCGCTCGCCATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGAT
CATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGG
CATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGG
CAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTG
GAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA
AAAGGGAACCTGCTACTTTACTCCAGAATTCTGTTCCTCCAGACCAAGAAGACATTCTCA
ATTAGAAAAACACAATTTGGTTCTACCACATCCTGACTACTACAGTATAGTTTTCTCTAT
TCTTTCATTTTCCCCTTCCCCATTCCTTTATTGTACATAAAGTAACTGGTGTATGTGCAC
AAGCATATTGCATTTTTTTTTTAAACTAAATGGCCAATGGTATGTTTTGATTGACATCAA
ATGGAGATGGGATGGGGAAAAATACTGGTTCTGTGAAAATACCCCCTTTCTCCATTAGTG
GCATGCTCATTCATTTCTTATCTTTATATTCCAGTAAGTTATTTTGCTCTCACTGTTTAA
CAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCGCGCCCTCTCCCTCCTCCACCGCTGCCGCCTCCTTCTTCTGCCGCTCCTGGTGCTGC
TTGTGTGCTCGTTCGGTGCGGACCTGGTACCTCTTTTGTGAAGCGGCAGCTGAGGAGACT
CCGGCGCTCGCCATGGCCGACGAAAAGCCCAAGGAAGGAGTCAAGACTGAGAACAACGAT
CATATTAATTTGAAGGTGGCGGGGCAGGATGGTTCTGTGGTGCAGTTTAAGATTAAGAGG
CATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGACAGGGTTTGTCAATGAGG
CAGATCAGATTCCGATTTGACGGGCAGCCAATCAATGAAACAGACACACCTGCACAGTTG
GAAATGGAGGATGAAGATACAATTGATGTGTTCCAGCAGCAGACAGGAGGTGTCTACTAA
AAAGGGAACCTGCTACTTTACTCCAGAATTCTGTTCCTCCAGACCAAGAAGACATTCTCA
ATTAGAAAAACACAATTTGGTTCTACCACATCCTGACTACTACAGTATAGTTTTCTCTAT
TCTTTCATTTTCCCCTTCCCCATTCCTTTATTGTACATAAAGTAACTGGTGTATGTGCAC
AAGCATATTGCATTTTTTTTTTAAACTAAATGGCCAATGGTATGTTTTGATTGACATCAA
ATGGAGATGGGATGGGGAAAAATACTGGTTCTGTGAAAATACCCCCTTTCTCCATTAGTG
GCATGCTCATTCATTTCTTATCTTTATATTCCAGTAAGTTATTTTGCTCTCACTGTTTAA
CAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
40-349, gnl|bosTau2|chr10 (60788400-60788711) |
|
40-349, gnl|Hg17|chr14 (73728587-73729219) |
|
40-349, gnl|Mm7|chr1 (15022362-15022053) |
| |
|
356-803, gnl|bosTau2|chr19 (50864970-50865413) |
|
356-803, gnl|canFam2|chr9 (8308168-8308689) |
|
356-803, gnl|dasNov1|scaffold_245002 (1551-1034) |
|
356-803, gnl|echTel1|scaffold_35820 (332-865) |
|
356-803, gnl|galGal2|chr3_random (1365739-1365234) |
|
356-803, gnl|Hg17|chr17 (70676093-70675637) |
|
356-803, gnl|hg17|chr8 (48602848-48603406) |
|
356-803, gnl|loxAfr1|scaffold_114101 (1638-2176) |
|
356-803, gnl|mm7|chr10 (129175910-129176435) |
|
356-803, gnl|Mm7|chr11 (115632816-115632362) |
|
356-803, gnl|monDom2|scaffold_8 (80961874-80961338) |
|
356-803, gnl|oryCun1|scaffold_212049 (125590-125072) |
|
356-803, gnl|panTro1|chr7 (50165269-50165827) |
|
356-803, gnl|rheMac2|chr8 (50033845-50034397) |
|
356-803, gnl|rn3|chr6 (108172482-108171975) |
| |
|
432-798, gnl|bosTau2|chr10 (3866708-3867066) |
|
432-798, gnl|Hg17|chr5 (78085469-78086481) |
|
432-798, gnl|Mm7|chr18 (45663309-45662928) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
40-349, gnl|bosTau2|chr10 (60788400-60788711) |
|
40-349, gnl|Hg17|chr14 (73728587-73729219) |
|
40-349, gnl|Mm7|chr1 (15022362-15022053) |
| |
|
356-803, gnl|bosTau2|chr19 (50864970-50865413) |
|
356-803, gnl|canFam2|chr9 (8308168-8308689) |
|
356-803, gnl|dasNov1|scaffold_245002 (1551-1034) |
|
356-803, gnl|echTel1|scaffold_35820 (332-865) |
|
356-803, gnl|galGal2|chr3_random (1365739-1365234) |
|
356-803, gnl|Hg17|chr17 (70676093-70675637) |
|
356-803, gnl|hg17|chr8 (48602848-48603406) |
|
356-803, gnl|loxAfr1|scaffold_114101 (1638-2176) |
|
356-803, gnl|mm7|chr10 (129175910-129176435) |
|
356-803, gnl|Mm7|chr11 (115632816-115632362) |
|
356-803, gnl|monDom2|scaffold_8 (80961874-80961338) |
|
356-803, gnl|oryCun1|scaffold_212049 (125590-125072) |
|
356-803, gnl|panTro1|chr7 (50165269-50165827) |
|
356-803, gnl|rheMac2|chr8 (50033845-50034397) |
|
356-803, gnl|rn3|chr6 (108172482-108171975) |
| |
|
432-798, gnl|bosTau2|chr10 (3866708-3867066) |
|
432-798, gnl|Hg17|chr5 (78085469-78086481) |
|
432-798, gnl|Mm7|chr18 (45663309-45662928) |
|
ecc (1.26539) |
|
cbl (1.03318) |
|
cki (0.991408) |
|
pgl (0.947867) |
|
ova (0.903926) |
|
gul (0.887942) |
|
thg (0.887536) |
|
hea (0.817996) |
|
bla (0.746083) |
|
fty (0.703359) |
|
ece (0.687916) |
|
spc (0.680195) |
|
nco (0.646935) |
|
eep (0.61282) |
|
med (0.58126) |
|
nlu (0.575043) |
|
fce (0.543183) |
|
ssp (0.542079) |
|
sto (0.539471) |
|
lyg (0.532411) |
|
ill (0.526778) |
|
sin (0.524843) |
|
rec (0.519211) |
|
pro (0.512033) |
|
eje (0.494169) |
|
lun (0.451467) |
|
ski (0.440205) |
|
pty (0.428143) |
|
cst (0.420109) |
|
tes (0.415628) |
|
ste (0.405625) |
|
kid (0.389206) |
|
ldo (0.38801) |
|
elu (0.385356) |
|
sug (0.381874) |
|
mcp (0.341297) |
|
csp (0.322373) |
|
sme (0.305437) |
|
cag (0.302389) |
|
fat (0.294855) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
tra (0.246184) |
|
cly (0.241284) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fli (0.202881) |
|
jej (0.197844) |
|
aor (0.195274) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
eli (0.151814) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
eru (0.120048) |
|
jca (0.11396) |
|
cty (0.10408) |
|
ecc (1.26539) |
|
cbl (1.03318) |
|
cki (0.991408) |
|
pgl (0.947867) |
|
ova (0.903926) |
|
gul (0.887942) |
|
thg (0.887536) |
|
hea (0.817996) |
|
bla (0.746083) |
|
fty (0.703359) |
|
ece (0.687916) |
|
spc (0.680195) |
|
nco (0.646935) |
|
eep (0.61282) |
|
med (0.58126) |
|
nlu (0.575043) |
|
fce (0.543183) |
|
ssp (0.542079) |
|
sto (0.539471) |
|
lyg (0.532411) |
|
ill (0.526778) |
|
sin (0.524843) |
|
rec (0.519211) |
|
pro (0.512033) |
|
eje (0.494169) |
|
lun (0.451467) |
|
ski (0.440205) |
|
pty (0.428143) |
|
cst (0.420109) |
|
tes (0.415628) |
|
ste (0.405625) |
|
kid (0.389206) |
|
ldo (0.38801) |
|
elu (0.385356) |
|
sug (0.381874) |
|
mcp (0.341297) |
|
csp (0.322373) |
|
sme (0.305437) |
|
cag (0.302389) |
|
fat (0.294855) |
|
spl (0.286369) |
|
lnt (0.284616) |
|
cga (0.279096) |
|
tra (0.246184) |
|
cly (0.241284) |
|
ebs (0.236602) |
|
pan (0.23596) |
|
mgp (0.230681) |
|
fli (0.202881) |
|
jej (0.197844) |
|
aor (0.195274) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
eli (0.151814) |
|
bfe (0.149858) |
|
liv (0.146284) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
nmm (0.132802) |
|
ret (0.128733) |
|
cbr (0.127975) |
|
ese (0.126502) |
|
eru (0.120048) |
|
jca (0.11396) |
|
cty (0.10408) |
