Ss1.1-rpgl08_e20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATAAATTCATCCGGGAATTATTTGAATCATCCACAAATAACAACAAAGATACTAAACA AAAAGCAGGAAAACTTAGCTTCATCAGTGTGGGAAACAAGTTTAAGACACAGTTAAATTT GCTTCTGGATAAACTTCGAAGTACTGGAGCAAGCTTTATTCGTTGTATCAAACCTAATTT AAAGATGACAAGCCACCACTTTGAAGGTGCTCAGATTTTGTCTCAACTTCAATGTTCAGG TATGGTGTCTGTTTTGGACCTGATGCAGGGCGGGTTTCCATCACGGGCTTCATTTCATGA ACTCTACAACATGTATAAGAAGTATATGCCGGATAAGCTTGCAAGATTAGACCCAAGACT ATTTTGTAAGGCTCTTTTTAAAGCCCTGGGCTTAAATGAAATTGACTACAAGTTTGGGTT AACAAAAGTATTTTTTAGACCTGGCAAGTTTGCAGAATTTGATCAGATTATGAAGTCCGA CCCTGACCACTTAGCAGAGCTGGTTAAGAGAGTCAATCACTGGCTTATCTGCAGTCGCTG GAAGAAAGTTCAGTGGTGCTCGCTCTCAGTCATTAAATTGAAAAACAAAATAAAATATCG AGCTGAAGCCTGCATTAAAATGCAGAAAACTATTCGAATGTGGCTTTGCAAAAGGAGACA CAAACCTCGCATTGACGGCCTTGTTAAGGTGGGCACACTGAAAAAACGGCTTGACAAATT TAACGAAGTAGTAAGTGCCCTGAAAGATGGAAAACAGGAAATGAGTAAACAGGTCAAGGA CCTTGAAATCTCTATTGATGCTTTAATGGCCAAAATTAAGTCTACTATGATGACAAGGGA ACAAATTCAGAAAGAATATGATGCATTAGTTAAAAGCTCAGCCGTCCTCCTCAGTGCATT ACAGAAAAAGAAGCAGCAAGAAGAGGAAGCAGAAAGGCTGAGGCGTATTCAAGAAGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATAAATTCATCCGGGAATTATTTGAATCATCCACAAATAACAACAAAGATACTAAACA AAAAGCAGGAAAACTTAGCTTCATCAGTGTGGGAAACAAGTTTAAGACACAGTTAAATTT GCTTCTGGATAAACTTCGAAGTACTGGAGCAAGCTTTATTCGTTGTATCAAACCTAATTT AAAGATGACAAGCCACCACTTTGAAGGTGCTCAGATTTTGTCTCAACTTCAATGTTCAGG TATGGTGTCTGTTTTGGACCTGATGCAGGGCGGGTTTCCATCACGGGCTTCATTTCATGA ACTCTACAACATGTATAAGAAGTATATGCCGGATAAGCTTGCAAGATTAGACCCAAGACT ATTTTGTAAGGCTCTTTTTAAAGCCCTGGGCTTAAATGAAATTGACTACAAGTTTGGGTT AACAAAAGTATTTTTTAGACCTGGCAAGTTTGCAGAATTTGATCAGATTATGAAGTCCGA CCCTGACCACTTAGCAGAGCTGGTTAAGAGAGTCAATCACTGGCTTATCTGCAGTCGCTG GAAGAAAGTTCAGTGGTGCTCGCTCTCAGTCATTAAATTGAAAAACAAAATAAAATATCG AGCTGAAGCCTGCATTAAAATGCAGAAAACTATTCGAATGTGGCTTTGCAAAAGGAGACA CAAACCTCGCATTGACGGCCTTGTTAAGGTGGGCACACTGAAAAAACGGCTTGACAAATT TAACGAAGTAGTAAGTGCCCTGAAAGATGGAAAACAGGAAATGAGTAAACAGGTCAAGGA CCTTGAAATCTCTATTGATGCTTTAATGGCCAAAATTAAGTCTACTATGATGACAAGGGA ACAAATTCAGAAAGAATATGATGCATTAGTTAAAAGCTCAGCCGTCCTCCTCAGTGCATT ACAGAAAAAGAAGCAGCAAGAAGAGGAAGCAGAAAGGCTGAGGCGTATTCAAGAAGAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 252-371, + strand, RNAz p=0.548366 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 252-371, + strand, RNAz p=0.548366 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-106, gnl|bosTau2|chr9 (6059249-6059354) | |
| 1-106, gnl|canFam2|chr12 (40467712-40467902) | |
| 1-106, gnl|danRer3|chr20 (63542-63364) | |
| 1-106, gnl|dasNov1|scaffold_2917 (75621-75431) | |
| 1-106, gnl|echTel1|scaffold_320528 (87382-87572) | |
| 1-106, gnl|fr1|chrUn (67133747-67133927) | |
| 1-106, gnl|galGal2|chr3 (78812103-78811913) | |
| 1-106, gnl|hg17|chr6 (76633363-76633553) | |
| 1-106, gnl|Hg17|chr6 (76633437-76633542) | |
| 1-106, gnl|loxAfr1|scaffold_55453 (6440-6249) | |
| 1-106, gnl|mm7|chr9 (80346435-80346625) | |
| 1-106, gnl|Mm7|chr9 (80346509-80346614) | |
| 1-106, gnl|monDom2|scaffold_0 (157310153-157309958) | |
| 1-106, gnl|panTro1|chr5 (77991576-77991766) | |
| 1-106, gnl|rheMac2|chr4 (72007671-72007861) | |
| 1-106, gnl|rn3|chr8 (85343937-85344127) | |
| 1-106, gnl|tetNig1|chr14 (9367352-9367175) | |
| 1-106, gnl|xenTro1|scaffold_166 (631365-631547) | |
| 238-371, gnl|bosTau2|chr9 (6072001-6072134) | |
| 238-371, gnl|Hg17|chr6 (76646255-76646388) | |
| 238-371, gnl|Mm7|chr9 (80357906-80358039) | |
| 447-578, gnl|bosTau2|chr9 (6074090-6074221) | |
| 447-578, gnl|canFam2|chr12 (40481506-40481656) | |
| 447-578, gnl|danRer3|chr20 (59786-59649) | |
| 447-578, gnl|dasNov1|scaffold_2917 (64023-63873) | |
| 447-578, gnl|echTel1|scaffold_316795 (41329-41479) | |
| 447-578, gnl|fr1|chrUn (67135427-67135561) | |
| 447-578, gnl|galGal2|chr3 (78804694-78804550) | |
| 447-578, gnl|hg17|chr6 (76648122-76648272) | |
| 447-578, gnl|Hg17|chr6 (76648124-76648255) | |
| 447-578, gnl|loxAfr1|scaffold_1213 (25702-25852) | |
| 447-578, gnl|mm7|chr9 (80359898-80360048) | |
| 447-578, gnl|Mm7|chr9 (80359900-80360031) | |
| 447-578, gnl|monDom2|scaffold_0 (157290142-157289992) | |
| 447-578, gnl|oryCun1|scaffold_198597 (14820-14963) | |
| 447-578, gnl|panTro1|chr5 (78006355-78006505) | |
| 447-578, gnl|rheMac2|chr4 (72021692-72021842) | |
| 447-578, gnl|rn3|chr8 (85358295-85358445) | |
| 447-578, gnl|tetNig1|chr14 (9366230-9366094) | |
| 447-578, gnl|xenTro1|scaffold_166 (642133-642283) | |
| 669-820, gnl|bosTau2|chr9 (6077832-6077983) | |
| 669-820, gnl|Hg17|chr6 (76653280-76653431) | |
| 669-820, gnl|Mm7|chr9 (80362728-80362879) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-106, gnl|bosTau2|chr9 (6059249-6059354) | |
| 1-106, gnl|canFam2|chr12 (40467712-40467902) | |
| 1-106, gnl|danRer3|chr20 (63542-63364) | |
| 1-106, gnl|dasNov1|scaffold_2917 (75621-75431) | |
| 1-106, gnl|echTel1|scaffold_320528 (87382-87572) | |
| 1-106, gnl|fr1|chrUn (67133747-67133927) | |
| 1-106, gnl|galGal2|chr3 (78812103-78811913) | |
| 1-106, gnl|hg17|chr6 (76633363-76633553) | |
| 1-106, gnl|Hg17|chr6 (76633437-76633542) | |
| 1-106, gnl|loxAfr1|scaffold_55453 (6440-6249) | |
| 1-106, gnl|mm7|chr9 (80346435-80346625) | |
| 1-106, gnl|Mm7|chr9 (80346509-80346614) | |
| 1-106, gnl|monDom2|scaffold_0 (157310153-157309958) | |
| 1-106, gnl|panTro1|chr5 (77991576-77991766) | |
| 1-106, gnl|rheMac2|chr4 (72007671-72007861) | |
| 1-106, gnl|rn3|chr8 (85343937-85344127) | |
| 1-106, gnl|tetNig1|chr14 (9367352-9367175) | |
| 1-106, gnl|xenTro1|scaffold_166 (631365-631547) | |
| 238-371, gnl|bosTau2|chr9 (6072001-6072134) | |
| 238-371, gnl|Hg17|chr6 (76646255-76646388) | |
| 238-371, gnl|Mm7|chr9 (80357906-80358039) | |
| 447-578, gnl|bosTau2|chr9 (6074090-6074221) | |
| 447-578, gnl|canFam2|chr12 (40481506-40481656) | |
| 447-578, gnl|danRer3|chr20 (59786-59649) | |
| 447-578, gnl|dasNov1|scaffold_2917 (64023-63873) | |
| 447-578, gnl|echTel1|scaffold_316795 (41329-41479) | |
| 447-578, gnl|fr1|chrUn (67135427-67135561) | |
| 447-578, gnl|galGal2|chr3 (78804694-78804550) | |
| 447-578, gnl|hg17|chr6 (76648122-76648272) | |
| 447-578, gnl|Hg17|chr6 (76648124-76648255) | |
| 447-578, gnl|loxAfr1|scaffold_1213 (25702-25852) | |
| 447-578, gnl|mm7|chr9 (80359898-80360048) | |
| 447-578, gnl|Mm7|chr9 (80359900-80360031) | |
| 447-578, gnl|monDom2|scaffold_0 (157290142-157289992) | |
| 447-578, gnl|oryCun1|scaffold_198597 (14820-14963) | |
| 447-578, gnl|panTro1|chr5 (78006355-78006505) | |
| 447-578, gnl|rheMac2|chr4 (72021692-72021842) | |
| 447-578, gnl|rn3|chr8 (85358295-85358445) | |
| 447-578, gnl|tetNig1|chr14 (9366230-9366094) | |
| 447-578, gnl|xenTro1|scaffold_166 (642133-642283) | |
| 669-820, gnl|bosTau2|chr9 (6077832-6077983) | |
| 669-820, gnl|Hg17|chr6 (76653280-76653431) | |
| 669-820, gnl|Mm7|chr9 (80362728-80362879) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sin (0.174948) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| spc (0.113366) |