Non-Coding RNA Search

Ss1.1-rpgl08_k19.5

Sequence:


               
               AGGATGCTTTCTGCTGTAAGTAATAGAAATGTCAGACTAAAAGTGGCATGTTTTCATGTT
ACAGGGAGGCTGGAAGTAGGCATGCAGAGTTGGTTAAGGCAGAACTTTGAGGCATTTTCT
CTGGTTCCACAAGGATTTACCTCAGAGATTAGAGGTTAGTTGTCACCAACCAGAAGTCTC
AAAGGCAGAAAGAAAGGGTTGCTTCTAACCCCATGCATCTCTCTCTCCCAGAACCCTCAG
CACTTCCTCTTAAATTGGCTAGAATTGGAGCACATGACCACCCTAAGCTAATCACTGGCA
AAGGAGAAAGGGATAACCCTAAATATCTTAAGGGTATTTTTATCCTCCTCTAGAGAGCAG
TGCTCAATTTCCCTGAACATTTATTTAGCCCTCCGATAACTAAAAAAA------------
------------------------------------------------------------
------------------------------------TTCCTTTTTTCTCTTTTGAGATAT
CATAAGCGGAATGTTTTGGGGGTCAGAAGCCAGCAATACCTGCCACCATCACCAATTACC
TTTTCAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATGCTTTCTGCTGTAAGTAATAGAAATGTCAGACTAAAAGTGGCATGTTTTCATGTT
ACAGGGAGGCTGGAAGTAGGCATGCAGAGTTGGTTAAGGCAGAACTTTGAGGCATTTTCT
CTGGTTCCACAAGGATTTACCTCAGAGATTAGAGGTTAGTTGTCACCAACCAGAAGTCTC
AAAGGCAGAAAGAAAGGGTTGCTTCTAACCCCATGCATCTCTCTCTCCCAGAACCCTCAG
CACTTCCTCTTAAATTGGCTAGAATTGGAGCACATGACCACCCTAAGCTAATCACTGGCA
AAGGAGAAAGGGATAACCCTAAATATCTTAAGGGTATTTTTATCCTCCTCTAGAGAGCAG
TGCTCAATTTCCCTGAACATTTATTTAGCCCTCCGATAACTAAAAAAA------------
------------------------------------------------------------
------------------------------------TTCCTTTTTTCTCTTTTGAGATAT
CATAAGCGGAATGTTTTGGGGGTCAGAAGCCAGCAATACCTGCCACCATCACCAATTACC
TTTTCAAAATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-246, - strand, RNAz p=0.954595

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-246, - strand, RNAz p=0.954595

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-383, gnl|bosTau2|chr6 (43613640-43614005)
               

               
               20-383, gnl|Hg17|chr4 (68431546-68431184)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-383, gnl|bosTau2|chr6 (43613640-43614005)
               

               
               20-383, gnl|Hg17|chr4 (68431546-68431184)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	20-383, gnl\|bosTau2\|chr6 (43613640-43614005)
	20-383, gnl\|Hg17\|chr4 (68431546-68431184)