Non-Coding RNA Search

Ss1.1-rpgl08_k24.5

Sequence:


               
               GTTGCTTATAGCTGAGCATTATTTTCTTAAATTCCTTGAACGTTCCATATGGTAGCGTTA
CTAAAAAGTCTGTCATCACTTTTCCATTGTGAACATAATTTGGAAAATACAGAACAGTGG
AGGGAAAAAAAAATCCATCTACTCACCATCCAAAGACAGGTATACTCCTCAGCATATGGT
TTATTCTCGTTTCTGTGCACAGGTTTATGATCCTAACTGTGTCAGCTGTGTATTCAAATA
GCTGTTACTTTCGTGGAATTACAATTAAACACGCTCATCCTCACCGTTTCAGATGTTCCT
TATAACGGTGTCCTGATGACAAGGTTGATTATGTGTGTTTCCATTACAAACATAACACAC
ACCCAGAGGAAAAATTGGAAAATTCAAAATAAATGAGAGAAGGAAAAAAAGGTCACCCAT
ATTCCCAGCACCTAACAACTGCCGCAAACACCTTGCTGTGTTTCCTCCATCTCGTTTCAG
TGCACAAGCTTGTGATTATGACAGTGTGAAGTATGTGTGCATACAGTCTCAAATGAAAAA
CATGCGGAAAATAATTAAAACAGTGTTGTCGTTGTGGGAGTATGGTTAACTATTTTGTCT
CAAATTCCTTGAATGATCCTAGGTGTTTGGTATTCAATCTTAGCATATGTATTTTTCCAT
TCCAAGTACAATACATACTCATGGCAAACTTTGGGGAGATTTCAGGAAAGTGGAAGAAAA
GAAATGCACCCAGGCTCCTGGCACCTGTCGCCATTGCTGTTTACACCTCGAACCTGTGCA
CGGTCTGGCTGTTGGGCTGTTTAGGACGAGTACGTGGTGTGTCAAAGACGGGAAGAAACA
CGGAAAACAGCTGAGAAATGGTTGTGTGGTCGTTGTGGGTTTATGGTCAAGTATTTTGTC
CTGGCTTTCTGGAACGGTCTTCATCCGAGTGTTTTGGTGACCTACCTTTATTCCATGTAT
TTCCATTATAACCCCAGTATGTGTTCATCATAGAAACTTGGAAGTTACAGAAATGTAGAA
GAGAGACTCACCCATATTGTCATCCAAAGGCTGTGGTTAACATGCTGATACAATTTTTTC
ATCTTGTTTCTGTGCACAGGTTTTTGGTTTGTTAATATGGTTGTGGTCGTTCTATCTATC
TGTAATAGTGTCACCAGTAAAAATAAAGTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCTTATAGCTGAGCATTATTTTCTTAAATTCCTTGAACGTTCCATATGGTAGCGTTA
CTAAAAAGTCTGTCATCACTTTTCCATTGTGAACATAATTTGGAAAATACAGAACAGTGG
AGGGAAAAAAAAATCCATCTACTCACCATCCAAAGACAGGTATACTCCTCAGCATATGGT
TTATTCTCGTTTCTGTGCACAGGTTTATGATCCTAACTGTGTCAGCTGTGTATTCAAATA
GCTGTTACTTTCGTGGAATTACAATTAAACACGCTCATCCTCACCGTTTCAGATGTTCCT
TATAACGGTGTCCTGATGACAAGGTTGATTATGTGTGTTTCCATTACAAACATAACACAC
ACCCAGAGGAAAAATTGGAAAATTCAAAATAAATGAGAGAAGGAAAAAAAGGTCACCCAT
ATTCCCAGCACCTAACAACTGCCGCAAACACCTTGCTGTGTTTCCTCCATCTCGTTTCAG
TGCACAAGCTTGTGATTATGACAGTGTGAAGTATGTGTGCATACAGTCTCAAATGAAAAA
CATGCGGAAAATAATTAAAACAGTGTTGTCGTTGTGGGAGTATGGTTAACTATTTTGTCT
CAAATTCCTTGAATGATCCTAGGTGTTTGGTATTCAATCTTAGCATATGTATTTTTCCAT
TCCAAGTACAATACATACTCATGGCAAACTTTGGGGAGATTTCAGGAAAGTGGAAGAAAA
GAAATGCACCCAGGCTCCTGGCACCTGTCGCCATTGCTGTTTACACCTCGAACCTGTGCA
CGGTCTGGCTGTTGGGCTGTTTAGGACGAGTACGTGGTGTGTCAAAGACGGGAAGAAACA
CGGAAAACAGCTGAGAAATGGTTGTGTGGTCGTTGTGGGTTTATGGTCAAGTATTTTGTC
CTGGCTTTCTGGAACGGTCTTCATCCGAGTGTTTTGGTGACCTACCTTTATTCCATGTAT
TTCCATTATAACCCCAGTATGTGTTCATCATAGAAACTTGGAAGTTACAGAAATGTAGAA
GAGAGACTCACCCATATTGTCATCCAAAGGCTGTGGTTAACATGCTGATACAATTTTTTC
ATCTTGTTTCTGTGCACAGGTTTTTGGTTTGTTAATATGGTTGTGGTCGTTCTATCTATC
TGTAATAGTGTCACCAGTAAAAATAAAGTTAAAAATAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-1178, gnl|bosTau2|chr18 (55656242-55655073)
               

               
               4-1178, gnl|Hg17|chr19 (62014427-62013263)
               

               
               4-1178, gnl|Mm7|chr7 (6264236-6263081)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1178, gnl|bosTau2|chr18 (55656242-55655073)
               

               
               4-1178, gnl|Hg17|chr19 (62014427-62013263)
               

               
               4-1178, gnl|Mm7|chr7 (6264236-6263081)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               fhi (0.508733)
               

               
               pgl (0.35545)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.508733)
               

               
               pgl (0.35545)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	4-1178, gnl\|bosTau2\|chr18 (55656242-55655073)
	4-1178, gnl\|Hg17\|chr19 (62014427-62013263)
	4-1178, gnl\|Mm7\|chr7 (6264236-6263081)

	fhi (0.508733)
	pgl (0.35545)
	cte (0.29274)
	hyp (0.285673)
	cbe (0.239234)
	sto (0.179824)
	fbs (0.175346)
	fco (0.157208)
	ste (0.135208)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)
	spc (0.113366)