Non-Coding RNA Search

Ss1.1-rpgl08_n21.5

Sequence:


               
               CCAGTGTGTGCAACTCATGTGGATGAAGAAGAAGCAGCAGTTCTGCATCAGTGATGTCAT
CTATGAGAATGTCAGCAAGTCCTAGTTCAGAATCTGGACCAGACAGGACATCCTCCCTTG
CTTCCAGAATTTTGGGGGGCCCTACTAGCCATTTGCTAAAAAGAGCCCTGCTTTGTAAAA
TGTGGCCAAGGAAATAACTTCTCTCATAGAAGCACCAGGACGACTTAGCCTTAAAGAGCC
TACAGTGTCTTTTGGACTCTTTCACTTCTGGACATTCATTAACTGGACACCAGAAAGATC
CAGATGCTCTGCAAAGGGCAGGAAGCACAACCCTTCTGAAGGGTTTTGCTAGCCCTTTGC
TGGTTGGGCTGAGTTTTGGGGTTGTTGTTTTTAAGTGCAATAATTTCTGTGTATGTGTGA
TTTTATCAGAATGTTGAATTGTTTTCTGCCCACGCCATTGATCAAGCTCATAGCCCAAGC
AGGAACAAGCATTGTGAGTGTCAAATTGTACCTCATTGTTTAAAAGAGGCATGGCCACAC
ATGAAGAAATGGGATTTTGCTTCAAGGAAATTGAACCGGTGGTATCTGTACTCCAACACA
AGCGGGGAGGGTGGATGGGGGAAGAGAGAGAGGTTCTCCCCACAGATCGACTGCGAATCT
TTTCCAAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTGTGTGCAACTCATGTGGATGAAGAAGAAGCAGCAGTTCTGCATCAGTGATGTCAT
CTATGAGAATGTCAGCAAGTCCTAGTTCAGAATCTGGACCAGACAGGACATCCTCCCTTG
CTTCCAGAATTTTGGGGGGCCCTACTAGCCATTTGCTAAAAAGAGCCCTGCTTTGTAAAA
TGTGGCCAAGGAAATAACTTCTCTCATAGAAGCACCAGGACGACTTAGCCTTAAAGAGCC
TACAGTGTCTTTTGGACTCTTTCACTTCTGGACATTCATTAACTGGACACCAGAAAGATC
CAGATGCTCTGCAAAGGGCAGGAAGCACAACCCTTCTGAAGGGTTTTGCTAGCCCTTTGC
TGGTTGGGCTGAGTTTTGGGGTTGTTGTTTTTAAGTGCAATAATTTCTGTGTATGTGTGA
TTTTATCAGAATGTTGAATTGTTTTCTGCCCACGCCATTGATCAAGCTCATAGCCCAAGC
AGGAACAAGCATTGTGAGTGTCAAATTGTACCTCATTGTTTAAAAGAGGCATGGCCACAC
ATGAAGAAATGGGATTTTGCTTCAAGGAAATTGAACCGGTGGTATCTGTACTCCAACACA
AGCGGGGAGGGTGGATGGGGGAAGAGAGAGAGGTTCTCCCCACAGATCGACTGCGAATCT
TTTCCAAATATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-373, + strand, RNAz p=0.912912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-373, + strand, RNAz p=0.912912

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_030670, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_030670, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               115-672, gnl|bosTau2|chrX (32231509-32230923)
               

               
               115-672, gnl|Hg17|chr12 (15640317-15640909)
               

               
               115-672, gnl|Mm7|chr6 (137506878-137507465)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               115-672, gnl|bosTau2|chrX (32231509-32230923)
               

               
               115-672, gnl|Hg17|chr12 (15640317-15640909)
               

               
               115-672, gnl|Mm7|chr6 (137506878-137507465)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

	115-672, gnl\|bosTau2\|chrX (32231509-32230923)
	115-672, gnl\|Hg17\|chr12 (15640317-15640909)
	115-672, gnl\|Mm7\|chr6 (137506878-137507465)

	sto (0.179824)
	fhi (0.169578)
	cki (0.165235)
	lin (0.145603)
	hyp (0.142837)
	pgl (0.118483)