Non-Coding RNA Search

Ss1.1-rpgl10_a14.5

Sequence:


               
               GGACTACAGCTGCACTCAGGCCAATAACTTGGCCAGGTCCTTCTACCCCATGCTGAGGTA
TACCAACGGGCCGCCCCCCACGTAGAGGCCCAGCCCGCAGCCCTGGACCAGTCTGTGAGG
GACCTGAGCGCTGGTCCAGGGACCTGCCTCCTACGGACACCTCCCTCTGGCAGTGACCAG
GGAGCTCTCTCAGGACTCGGGGCAGGGGATCTGGGCACACTCACCCCAGCAGTTCAGCAA
AGCTAGGTGCTTGGTTTTGGGACTCGGGAAACTACAGTTTTGAAGACCAAGTGCTTTGTC
AACCTGTTGTCAGACCATGTTATTAAAATACGGTGAATATGGTCAGTGGACAGTAGTATG
CATTGAAGAATATATATGACAGAGAGAAGCAGATTCTGCATTAGAAATGGTTCAGAAACT
CCCCTGCACCCTTGGCTGATTGAAACAATCATATTTAAAATATTTAGAATTAATTTGACT
CCAATCAGCTAGCAGTCTTGAGCTACAGGTTATAAAACCAAAATATTCTGTTCAGTACTT
AGGTCTGCTCTTTTGTATTGCTTTAAATTTTTAAAGAAATTATATTGCATGGATGTGGTT
ATTTGTGCATATTTTTTAACAATGCAGAATCTGTATGAATAATGTAAACTTTGATTTTTT
AAAAAACAGATTTTAGCTTGAGCTTTTGACTAATGTACAGAAAATGCCAAACTACAGACT
TGATAGGGCCATTTTTGTAAGTTAATTTTATAAGACTTTTCACATTTAAAGTGATGCTTC
AAGTTTTTGCTTAACTGTTTGGCCATGGGGGTGGGGGTTGGTACAGAAACTTGAAGCTAT
TTGTGGTATTTACAACTCAGATTTTTCTCATTAAAACAAAAAAGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTACAGCTGCACTCAGGCCAATAACTTGGCCAGGTCCTTCTACCCCATGCTGAGGTA
TACCAACGGGCCGCCCCCCACGTAGAGGCCCAGCCCGCAGCCCTGGACCAGTCTGTGAGG
GACCTGAGCGCTGGTCCAGGGACCTGCCTCCTACGGACACCTCCCTCTGGCAGTGACCAG
GGAGCTCTCTCAGGACTCGGGGCAGGGGATCTGGGCACACTCACCCCAGCAGTTCAGCAA
AGCTAGGTGCTTGGTTTTGGGACTCGGGAAACTACAGTTTTGAAGACCAAGTGCTTTGTC
AACCTGTTGTCAGACCATGTTATTAAAATACGGTGAATATGGTCAGTGGACAGTAGTATG
CATTGAAGAATATATATGACAGAGAGAAGCAGATTCTGCATTAGAAATGGTTCAGAAACT
CCCCTGCACCCTTGGCTGATTGAAACAATCATATTTAAAATATTTAGAATTAATTTGACT
CCAATCAGCTAGCAGTCTTGAGCTACAGGTTATAAAACCAAAATATTCTGTTCAGTACTT
AGGTCTGCTCTTTTGTATTGCTTTAAATTTTTAAAGAAATTATATTGCATGGATGTGGTT
ATTTGTGCATATTTTTTAACAATGCAGAATCTGTATGAATAATGTAAACTTTGATTTTTT
AAAAAACAGATTTTAGCTTGAGCTTTTGACTAATGTACAGAAAATGCCAAACTACAGACT
TGATAGGGCCATTTTTGTAAGTTAATTTTATAAGACTTTTCACATTTAAAGTGATGCTTC
AAGTTTTTGCTTAACTGTTTGGCCATGGGGGTGGGGGTTGGTACAGAAACTTGAAGCTAT
TTGTGGTATTTACAACTCAGATTTTTCTCATTAAAACAAAAAAGCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               727-845, - strand, RNAz p=0.954726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               727-845, - strand, RNAz p=0.954726

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               90-881, gnl|bosTau2|chr10 (51865414-51864626)
               

               
               90-881, gnl|canFam2|chr8 (41672824-41673441)
               

               
               90-881, gnl|dasNov1|scaffold_105610 (2742-2118)
               

               
               90-881, gnl|echTel1|scaffold_281046 (27229-26702)
               

               
               90-881, gnl|hg17|chr14 (63762028-63762637)
               

               
               90-881, gnl|Hg17|chr14 (63762027-63762890)
               

               
               90-881, gnl|loxAfr1|scaffold_2158 (112693-113297)
               

               
               90-881, gnl|mm7|chr12 (74068647-74069247)
               

               
               90-881, gnl|Mm7|chr12 (74068646-74069490)
               

               
               90-881, gnl|monDom2|scaffold_8 (77838754-77839513)
               

               
               90-881, gnl|oryCun1|scaffold_172786 (67678-67090)
               

               
               90-881, gnl|panTro1|chr15 (63328506-63329111)
               

               
               90-881, gnl|rheMac2|chr7 (127246807-127247419)
               

               
               90-881, gnl|rn3|chr6 (98682960-98683569)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-881, gnl|bosTau2|chr10 (51865414-51864626)
               

               
               90-881, gnl|canFam2|chr8 (41672824-41673441)
               

               
               90-881, gnl|dasNov1|scaffold_105610 (2742-2118)
               

               
               90-881, gnl|echTel1|scaffold_281046 (27229-26702)
               

               
               90-881, gnl|hg17|chr14 (63762028-63762637)
               

               
               90-881, gnl|Hg17|chr14 (63762027-63762890)
               

               
               90-881, gnl|loxAfr1|scaffold_2158 (112693-113297)
               

               
               90-881, gnl|mm7|chr12 (74068647-74069247)
               

               
               90-881, gnl|Mm7|chr12 (74068646-74069490)
               

               
               90-881, gnl|monDom2|scaffold_8 (77838754-77839513)
               

               
               90-881, gnl|oryCun1|scaffold_172786 (67678-67090)
               

               
               90-881, gnl|panTro1|chr15 (63328506-63329111)
               

               
               90-881, gnl|rheMac2|chr7 (127246807-127247419)
               

               
               90-881, gnl|rn3|chr6 (98682960-98683569)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               mga (0.32041)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sag (0.36543)
               

               
               pgl (0.35545)
               

               
               mga (0.32041)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	90-881, gnl\|bosTau2\|chr10 (51865414-51864626)
	90-881, gnl\|canFam2\|chr8 (41672824-41673441)
	90-881, gnl\|dasNov1\|scaffold_105610 (2742-2118)
	90-881, gnl\|echTel1\|scaffold_281046 (27229-26702)
	90-881, gnl\|hg17\|chr14 (63762028-63762637)
	90-881, gnl\|Hg17\|chr14 (63762027-63762890)
	90-881, gnl\|loxAfr1\|scaffold_2158 (112693-113297)
	90-881, gnl\|mm7\|chr12 (74068647-74069247)
	90-881, gnl\|Mm7\|chr12 (74068646-74069490)
	90-881, gnl\|monDom2\|scaffold_8 (77838754-77839513)
	90-881, gnl\|oryCun1\|scaffold_172786 (67678-67090)
	90-881, gnl\|panTro1\|chr15 (63328506-63329111)
	90-881, gnl\|rheMac2\|chr7 (127246807-127247419)
	90-881, gnl\|rn3\|chr6 (98682960-98683569)

	elu (0.385356)
	sag (0.36543)
	pgl (0.35545)
	mga (0.32041)
	lin (0.145603)
	ova (0.129132)
	tra (0.123092)
	jca (0.11396)