Non-Coding RNA Search

Ss1.1-rpgl10_e6.5

Sequence:


               
               GGGTATGCTCGACATGCTGCGCGGCGACTCCTCCCACGTGGTTAGCGAAGGCGTGCCTCG
CATTTACGCTAAGGCCACCGAGATGCGTCGGGTCTACAGCAAGATCGACCGGCTCGAGGC
CTTCGTGGGGATGATCGGCGCCAGCGTGGCCAGGATGGAGGAGCATGTCGCCAGGGCGGA
GGCCGAGCTGGGGACTTTCCCTAGTACATTCCGGAAACTCCTGCACACAATTAACGTGCC
GTCCTTCTTCAACAAGGCGCCCTCCAGCAAATCCCAGCTGACGGGATACGAGCCCCCCGT
CGTGTTTCGGACAGAAGACCACTTTCCCTGTTGCAGCGAAAGACCTCAGGTGTGAGTCTG
CCGCACAGCGCTGCAAGAGGACGCGGTCTGAAATTATCAATTGAAAGTGCTGTTAATAGA
CATGCACGATGTTGGAGTTTGGAATTTTCAAGTAATTTTTTGCACACTTCATTTCTCACG
TCTTCATCTCACATAGGATATAAGATTTTCTTTTTCTTTTTTCTTTTCTGCCCTGTGGCA
TGCGTTAGTTCTGGGGTCAGGAGAAGAACCTGTGCCACAGCAGTGGCTTAAACTATAGCA
GTGACAACACCAGATCCTTAACCTGCCGAGCCACCAGGGAACTCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTATGCTCGACATGCTGCGCGGCGACTCCTCCCACGTGGTTAGCGAAGGCGTGCCTCG
CATTTACGCTAAGGCCACCGAGATGCGTCGGGTCTACAGCAAGATCGACCGGCTCGAGGC
CTTCGTGGGGATGATCGGCGCCAGCGTGGCCAGGATGGAGGAGCATGTCGCCAGGGCGGA
GGCCGAGCTGGGGACTTTCCCTAGTACATTCCGGAAACTCCTGCACACAATTAACGTGCC
GTCCTTCTTCAACAAGGCGCCCTCCAGCAAATCCCAGCTGACGGGATACGAGCCCCCCGT
CGTGTTTCGGACAGAAGACCACTTTCCCTGTTGCAGCGAAAGACCTCAGGTGTGAGTCTG
CCGCACAGCGCTGCAAGAGGACGCGGTCTGAAATTATCAATTGAAAGTGCTGTTAATAGA
CATGCACGATGTTGGAGTTTGGAATTTTCAAGTAATTTTTTGCACACTTCATTTCTCACG
TCTTCATCTCACATAGGATATAAGATTTTCTTTTTCTTTTTTCTTTTCTGCCCTGTGGCA
TGCGTTAGTTCTGGGGTCAGGAGAAGAACCTGTGCCACAGCAGTGGCTTAAACTATAGCA
GTGACAACACCAGATCCTTAACCTGCCGAGCCACCAGGGAACTCCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834825|ref|XP_596737.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834825|ref|XP_596737.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-397, - strand, RNAz p=0.690088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-397, - strand, RNAz p=0.690088

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-518, gnl|bosTau2|chr6 (65689362-65689898)
               

               
               1-518, gnl|Hg17|chr4 (6836308-6836842)
               

               
               1-518, gnl|Mm7|chr5 (35829787-35829265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-518, gnl|bosTau2|chr6 (65689362-65689898)
               

               
               1-518, gnl|Hg17|chr4 (6836308-6836842)
               

               
               1-518, gnl|Mm7|chr5 (35829787-35829265)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               cje (0.165235)
               

               
               bfe (0.149858)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)

	1-518, gnl\|bosTau2\|chr6 (65689362-65689898)
	1-518, gnl\|Hg17\|chr4 (6836308-6836842)
	1-518, gnl\|Mm7\|chr5 (35829787-35829265)

	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	cmu (0.186393)
	cje (0.165235)
	bfe (0.149858)
	lyg (0.133103)
	tra (0.123092)
	pgl (0.118483)