Non-Coding RNA Search

Ss1.1-rpgl10_f12.5

Sequence:


               
               AGTGAGGATTGGTGTAAGAACCAGTTGAGAAGTCAGGAGGTGCATCCTGGTCAACTGATG
ATCACTCATAAAGAAATCCTCAATGTAGAGCAAAGTAATGAATATACTAAATCTTGGCAG
ACTTTCCATCAGGGTGCAATCTTTGACATAAAGCAGAGTTTTCCTACCAAAGAAAGAATA
CATAAACATGAGCCACAAAAGAGAAGGTACCAGAAAAAACCTGCTGAAATGAAACGTAAG
AAAGTTTATGTAGAAAAGAAACTTTTGAAATGTAATGAATGTGAGAAAGTTTTCAACCAG
ACCTCATCTCTTACTCTTCATCAGAGAATTCATACTGGAGAGAAACCCTATGCATGTGTT
GAATGTGGGAAAACCTTCAGCCAGAGTGCAAACCTAGCTCAGCATAAGAGAATACATACC
GGAGAGAAACCCTATGAATGTAAAGAGTGTCGGAAAGCCTTCAGCCAGAATGCCCACCTT
GCTCAACATCAGAGAGTTCATACTGGAGAAAAACCTTATCAGTGTAAAGAATGTAAAAAA
GCCTTCAGCCAGATTGCACACCTGACTCAACACCAGCGAGTTCATACCGGAGAGAGACCT
TTTGAATGTATTGAATGTGGAAAGGCCTTTAGTAATGGTTCGTTTCTTGCTCAGCATCAG
AGAATTCACACCGGAGAGAAACCTTACGTATGCAGTGTCTGTGGGAAAGCCTTTAGCCAT
CGTGGATACCTGATTGTACATCAGAGAATTCATACTGGAGAGAGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAGGATTGGTGTAAGAACCAGTTGAGAAGTCAGGAGGTGCATCCTGGTCAACTGATG
ATCACTCATAAAGAAATCCTCAATGTAGAGCAAAGTAATGAATATACTAAATCTTGGCAG
ACTTTCCATCAGGGTGCAATCTTTGACATAAAGCAGAGTTTTCCTACCAAAGAAAGAATA
CATAAACATGAGCCACAAAAGAGAAGGTACCAGAAAAAACCTGCTGAAATGAAACGTAAG
AAAGTTTATGTAGAAAAGAAACTTTTGAAATGTAATGAATGTGAGAAAGTTTTCAACCAG
ACCTCATCTCTTACTCTTCATCAGAGAATTCATACTGGAGAGAAACCCTATGCATGTGTT
GAATGTGGGAAAACCTTCAGCCAGAGTGCAAACCTAGCTCAGCATAAGAGAATACATACC
GGAGAGAAACCCTATGAATGTAAAGAGTGTCGGAAAGCCTTCAGCCAGAATGCCCACCTT
GCTCAACATCAGAGAGTTCATACTGGAGAAAAACCTTATCAGTGTAAAGAATGTAAAAAA
GCCTTCAGCCAGATTGCACACCTGACTCAACACCAGCGAGTTCATACCGGAGAGAGACCT
TTTGAATGTATTGAATGTGGAAAGGCCTTTAGTAATGGTTCGTTTCTTGCTCAGCATCAG
AGAATTCACACCGGAGAGAAACCTTACGTATGCAGTGTCTGTGGGAAAGCCTTTAGCCAT
CGTGGATACCTGATTGTACATCAGAGAATTCATACTGGAGAGAGACCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|51763044|ref|XP_145321.4|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|51763044|ref|XP_145321.4|

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               61-768, gnl|bosTau2|chr18 (44398628-44397924)
               


               
               171-767, gnl|bosTau2|chr10 (8996931-8996335)
               

               
               171-767, gnl|Hg17|chr19 (42818687-42818056)
               

               
               171-767, gnl|Mm7|chr2 (127310356-127309766)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-768, gnl|bosTau2|chr18 (44398628-44397924)
               


               
               171-767, gnl|bosTau2|chr10 (8996931-8996335)
               

               
               171-767, gnl|Hg17|chr19 (42818687-42818056)
               

               
               171-767, gnl|Mm7|chr2 (127310356-127309766)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               cty (0.10408)

	61-768, gnl\|bosTau2\|chr18 (44398628-44397924)

	171-767, gnl\|bosTau2\|chr10 (8996931-8996335)
	171-767, gnl\|Hg17\|chr19 (42818687-42818056)
	171-767, gnl\|Mm7\|chr2 (127310356-127309766)