Ss1.1-rpgl10_g2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACGCGTCCGCTTTAATTGCAAAGTATGACCTGAGTCATTTAACTGAGTCCACCATGAT TGGCTGTGACAGGCTCATCCGGATCTTCTGCCTGAACCCTGGCCTCGTGGTGGGGCTCTG GCAGAGGGAGGAAGAACTGGCTTTTGTTATGGCAAATCTTCATTTCCATCACCTTGTGGA GAGGAGCACATTAGGCTCGGCTGCTGTCCCCTACGAGCTGCCTCCTCATACCCCCTTTTT GGATGATAGCCCAGAGTATGGACTGCATGGCTACCAACTCCATGTCGATATGCACAGCGG GGGAGTTTTCTGCCTGTGTGGTACATTTGACAACCTCTTCACCAAGAAAGGGTACATTGA AAATGAATATGTGAAGCTCATTGTGATAAGTTTTAAAAATAGCACAGAACACCTACCTCT TATTGGAAAAGTTGGCCTTTCTTGGAAAACTAATATTTTTGATGGCTATATAAAGAGTTG CTCTATAATGGATGTAACTCTTTTGGATGAGTATGGGAAACCCTTCTGGTGTTTCAGTTC CCCAGTTTGCATTCAATCCTCGTCCAGGCCCTCTGATGGCCCCAATTTCTTGGGGGAGAC ATACTATGTGGACTACGTCGACTCGGAAGGCAAGGTGCACGTGGAGCTGCTGTGGCTCCA AGAGACGGAAGAATACCTTATTGTCAGCCTGGTGCTTTACCTGCGCGTAGCAAAAGTAAA CCATTGGTTTGGGACGAAATACTAAGCGTTAGCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACGCGTCCGCTTTAATTGCAAAGTATGACCTGAGTCATTTAACTGAGTCCACCATGAT TGGCTGTGACAGGCTCATCCGGATCTTCTGCCTGAACCCTGGCCTCGTGGTGGGGCTCTG GCAGAGGGAGGAAGAACTGGCTTTTGTTATGGCAAATCTTCATTTCCATCACCTTGTGGA GAGGAGCACATTAGGCTCGGCTGCTGTCCCCTACGAGCTGCCTCCTCATACCCCCTTTTT GGATGATAGCCCAGAGTATGGACTGCATGGCTACCAACTCCATGTCGATATGCACAGCGG GGGAGTTTTCTGCCTGTGTGGTACATTTGACAACCTCTTCACCAAGAAAGGGTACATTGA AAATGAATATGTGAAGCTCATTGTGATAAGTTTTAAAAATAGCACAGAACACCTACCTCT TATTGGAAAAGTTGGCCTTTCTTGGAAAACTAATATTTTTGATGGCTATATAAAGAGTTG CTCTATAATGGATGTAACTCTTTTGGATGAGTATGGGAAACCCTTCTGGTGTTTCAGTTC CCCAGTTTGCATTCAATCCTCGTCCAGGCCCTCTGATGGCCCCAATTTCTTGGGGGAGAC ATACTATGTGGACTACGTCGACTCGGAAGGCAAGGTGCACGTGGAGCTGCTGTGGCTCCA AGAGACGGAAGAATACCTTATTGTCAGCCTGGTGCTTTACCTGCGCGTAGCAAAAGTAAA CCATTGGTTTGGGACGAAATACTAAGCGTTAGCTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 656-753, + strand, RNAz p=0.5593 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 656-753, + strand, RNAz p=0.5593 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 208-351, gnl|bosTau2|chr24 (5036989-5036846) | |
| 208-351, gnl|canFam2|chr1 (8204457-8204141) | |
| 208-351, gnl|echTel1|scaffold_220331 (1020-1331) | |
| 208-351, gnl|hg17|chr18 (69941495-69941805) | |
| 208-351, gnl|Hg17|chr18 (69941725-69941582) | |
| 208-351, gnl|loxAfr1|scaffold_27665 (730-1052) | |
| 208-351, gnl|mm7|chr18 (85314802-85314491) | |
| 208-351, gnl|Mm7|chr18 (85314564-85314719) | |
| 208-351, gnl|monDom2|scaffold_3 (127418161-127417793) | |
| 208-351, gnl|oryCun1|scaffold_208327 (8323-8005) | |
| 208-351, gnl|panTro1|chr17 (67109696-67110006) | |
| 208-351, gnl|rheMac2|chr18 (67597188-67597498) | |
| 474-753, gnl|bosTau2|chr24 (5019971-5019692) | |
| 474-753, gnl|canFam2|chr1 (8233231-8232894) | |
| 474-753, gnl|echTel1|scaffold_209648 (2561-2892) | |
| 474-753, gnl|galGal2|chr2 (91897901-91897558) | |
| 474-753, gnl|hg17|chr18 (69891630-69891963) | |
| 474-753, gnl|Hg17|chr18 (69891947-69891675) | |
| 474-753, gnl|mm7|chr18 (85330563-85330250) | |
| 474-753, gnl|Mm7|chr18 (85330253-85330522) | |
| 474-753, gnl|monDom2|scaffold_3 (127451191-127450829) | |
| 474-753, gnl|oryCun1|scaffold_208327 (39786-39442) | |
| 474-753, gnl|rheMac2|chr18 (67544522-67544855) | |
| 474-753, gnl|rn3|chr18 (81673215-81672887) | |
| 474-753, gnl|xenTro1|scaffold_1076 (13576-13904) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 208-351, gnl|bosTau2|chr24 (5036989-5036846) | |
| 208-351, gnl|canFam2|chr1 (8204457-8204141) | |
| 208-351, gnl|echTel1|scaffold_220331 (1020-1331) | |
| 208-351, gnl|hg17|chr18 (69941495-69941805) | |
| 208-351, gnl|Hg17|chr18 (69941725-69941582) | |
| 208-351, gnl|loxAfr1|scaffold_27665 (730-1052) | |
| 208-351, gnl|mm7|chr18 (85314802-85314491) | |
| 208-351, gnl|Mm7|chr18 (85314564-85314719) | |
| 208-351, gnl|monDom2|scaffold_3 (127418161-127417793) | |
| 208-351, gnl|oryCun1|scaffold_208327 (8323-8005) | |
| 208-351, gnl|panTro1|chr17 (67109696-67110006) | |
| 208-351, gnl|rheMac2|chr18 (67597188-67597498) | |
| 474-753, gnl|bosTau2|chr24 (5019971-5019692) | |
| 474-753, gnl|canFam2|chr1 (8233231-8232894) | |
| 474-753, gnl|echTel1|scaffold_209648 (2561-2892) | |
| 474-753, gnl|galGal2|chr2 (91897901-91897558) | |
| 474-753, gnl|hg17|chr18 (69891630-69891963) | |
| 474-753, gnl|Hg17|chr18 (69891947-69891675) | |
| 474-753, gnl|mm7|chr18 (85330563-85330250) | |
| 474-753, gnl|Mm7|chr18 (85330253-85330522) | |
| 474-753, gnl|monDom2|scaffold_3 (127451191-127450829) | |
| 474-753, gnl|oryCun1|scaffold_208327 (39786-39442) | |
| 474-753, gnl|rheMac2|chr18 (67544522-67544855) | |
| 474-753, gnl|rn3|chr18 (81673215-81672887) | |
| 474-753, gnl|xenTro1|scaffold_1076 (13576-13904) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |