Non-Coding RNA Search

Ss1.1-rpgl10_h1.5

Sequence:


               
               TTTTTTTTTTTTTTTGGATTTTATAAAACAAGTTTATTCACATTTTAGAAAAACTCATCC
TGGGACAGGGAATGGCCTCCTTTTGGGGCTCGGTGTGGGATCGAGAATGGAAGGCCAGAC
AGAGGGAGGAGGTGGGGAAGGAAGGAGTGGGGAAGGGGGGCCATGTCCCCCACTCTGGTG
GGGAGTGAGTCAAATAAATTAAAGGCAATGCAGGCAGAGGGAGAGGGTCTCCAGGTACCA
GAGGTGGGCTGGCAGCTGGGCTGGAAGACGGTCACACCTGGGGAACGGGGGATCACCGTT
TCCGCAGCCTCTTCATGAAGCAGCAGGTGATAGTGCCAAGGATGGTGGCGCCGATGACTA
GGGCAACCCCTGCACCCACCAGCAGGGGCACAAACAGGGTGTCCAAGGCGTGTGTGTAGG
GGTAGACTGTGACAGGCCCCGAGCGGGCGCTGCCCGCCTGGTACCAGCTGTAGTCCGCGT
GCTGCACCCAGGCGCTGGGGGCACAGTGGTACACGCCTTCGTCCTCAGGCTCCAAGCTGT
GCAGTCTCAACCGATGGCTTCGGGGCCCCAGCAGCTCCACGCTGACAGGTCCTCCCCCAG
GCCGGACACCCAGCTCTGCCACACCGTCCTTGCCCACGCCACCCACCAGCTGAGCGTGGC
CAGAGCTCAGTTCCCCCTCCTCTGGCCGCTCCACCCACCAGCTGGCAGCCAACCGCAGCC
CGGGGGGGCCGCCCCGCACAGAGATGTTGCAGAGTAAGGAGGCTGTCTCCCCGCGGTACA
CTGTGCCTCCTGCCAGCCAGGCCACAGCCTCCAGCACCACACCTTCCTCTCGCACGTGCA
CAGGGAGGGGTCTGGAGCGGGCACTGGCTGCTTCACGAAGCCGGGCCCCAGACCCACGGA
CATAGGCCTTGGCAAGGCAGCGGTAGGTGCCCGCATCCCCTGGCCGGGCAGCCTCCAGCC
GTAGCCGATAGGTTCTCGAAGCCACCTTCTCCATGGCAATGTGCCGGCCCTCGTAGCCAG
GGCCCAGGCTGCCCACGCCCTCTGTGTCCAGCTGGGCAACCAGGCGGCCAGGCCCAGGTG
CCCCTGCAGGTGCCATTTCCCAACCCACGGAGTAAGCGGCATGCTGGCCTGGTGGGGGCA
GGGCCCCTGACACGTTGCACAGCAGCTCCAAGGGCTCCCCTGGGCCAATCCGACGTTCAC
CAGGCCCCACTGTCACTGCCAGCTGGCTGGACAGTGTCTGCACATCCACGTGGGCCAGGA
CAGCCCTCTTCTCCGCGATCTGGGCCCAGCTGCCATCGGGATCCTGAATCCACTCGGTGG
CAGTGCAGTGGTAGGTGCCTGCGTCCTCCGCCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTGGATTTTATAAAACAAGTTTATTCACATTTTAGAAAAACTCATCC
TGGGACAGGGAATGGCCTCCTTTTGGGGCTCGGTGTGGGATCGAGAATGGAAGGCCAGAC
AGAGGGAGGAGGTGGGGAAGGAAGGAGTGGGGAAGGGGGGCCATGTCCCCCACTCTGGTG
GGGAGTGAGTCAAATAAATTAAAGGCAATGCAGGCAGAGGGAGAGGGTCTCCAGGTACCA
GAGGTGGGCTGGCAGCTGGGCTGGAAGACGGTCACACCTGGGGAACGGGGGATCACCGTT
TCCGCAGCCTCTTCATGAAGCAGCAGGTGATAGTGCCAAGGATGGTGGCGCCGATGACTA
GGGCAACCCCTGCACCCACCAGCAGGGGCACAAACAGGGTGTCCAAGGCGTGTGTGTAGG
GGTAGACTGTGACAGGCCCCGAGCGGGCGCTGCCCGCCTGGTACCAGCTGTAGTCCGCGT
GCTGCACCCAGGCGCTGGGGGCACAGTGGTACACGCCTTCGTCCTCAGGCTCCAAGCTGT
GCAGTCTCAACCGATGGCTTCGGGGCCCCAGCAGCTCCACGCTGACAGGTCCTCCCCCAG
GCCGGACACCCAGCTCTGCCACACCGTCCTTGCCCACGCCACCCACCAGCTGAGCGTGGC
CAGAGCTCAGTTCCCCCTCCTCTGGCCGCTCCACCCACCAGCTGGCAGCCAACCGCAGCC
CGGGGGGGCCGCCCCGCACAGAGATGTTGCAGAGTAAGGAGGCTGTCTCCCCGCGGTACA
CTGTGCCTCCTGCCAGCCAGGCCACAGCCTCCAGCACCACACCTTCCTCTCGCACGTGCA
CAGGGAGGGGTCTGGAGCGGGCACTGGCTGCTTCACGAAGCCGGGCCCCAGACCCACGGA
CATAGGCCTTGGCAAGGCAGCGGTAGGTGCCCGCATCCCCTGGCCGGGCAGCCTCCAGCC
GTAGCCGATAGGTTCTCGAAGCCACCTTCTCCATGGCAATGTGCCGGCCCTCGTAGCCAG
GGCCCAGGCTGCCCACGCCCTCTGTGTCCAGCTGGGCAACCAGGCGGCCAGGCCCAGGTG
CCCCTGCAGGTGCCATTTCCCAACCCACGGAGTAAGCGGCATGCTGGCCTGGTGGGGGCA
GGGCCCCTGACACGTTGCACAGCAGCTCCAAGGGCTCCCCTGGGCCAATCCGACGTTCAC
CAGGCCCCACTGTCACTGCCAGCTGGCTGGACAGTGTCTGCACATCCACGTGGGCCAGGA
CAGCCCTCTTCTCCGCGATCTGGGCCCAGCTGCCATCGGGATCCTGAATCCACTCGGTGG
CAGTGCAGTGGTAGGTGCCTGCGTCCTCCGCCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20071849|gb|AAH26633.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20071849|gb|AAH26633.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               530-689, - strand, RNAz p=0.753784

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               530-689, - strand, RNAz p=0.753784

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK090396, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK090396, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               16-296, gnl|bosTau2|chr3 (4948493-4948218)
               

               
               16-296, gnl|Hg17|chr1 (156874204-156874482)
               

               
               16-296, gnl|Mm7|chr1 (172290013-172289746)
               


               
               411-855, gnl|bosTau2|chr3 (4947626-4947182)
               

               
               411-855, gnl|Hg17|chr1 (156875147-156875600)
               

               
               411-855, gnl|Mm7|chr1 (172289138-172288684)
               


               
               1231-1356, gnl|bosTau2|chr3 (4946384-4946259)
               

               
               1231-1356, gnl|Hg17|chr1 (156876573-156876698)
               

               
               1231-1356, gnl|Mm7|chr1 (172287989-172287864)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-296, gnl|bosTau2|chr3 (4948493-4948218)
               

               
               16-296, gnl|Hg17|chr1 (156874204-156874482)
               

               
               16-296, gnl|Mm7|chr1 (172290013-172289746)
               


               
               411-855, gnl|bosTau2|chr3 (4947626-4947182)
               

               
               411-855, gnl|Hg17|chr1 (156875147-156875600)
               

               
               411-855, gnl|Mm7|chr1 (172289138-172288684)
               


               
               1231-1356, gnl|bosTau2|chr3 (4946384-4946259)
               

               
               1231-1356, gnl|Hg17|chr1 (156876573-156876698)
               

               
               1231-1356, gnl|Mm7|chr1 (172287989-172287864)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hyp (0.42851)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

	16-296, gnl\|bosTau2\|chr3 (4948493-4948218)
	16-296, gnl\|Hg17\|chr1 (156874204-156874482)
	16-296, gnl\|Mm7\|chr1 (172290013-172289746)

	411-855, gnl\|bosTau2\|chr3 (4947626-4947182)
	411-855, gnl\|Hg17\|chr1 (156875147-156875600)
	411-855, gnl\|Mm7\|chr1 (172289138-172288684)

	1231-1356, gnl\|bosTau2\|chr3 (4946384-4946259)
	1231-1356, gnl\|Hg17\|chr1 (156876573-156876698)
	1231-1356, gnl\|Mm7\|chr1 (172287989-172287864)

	hyp (0.42851)
	fce (0.271592)
	ece (0.229305)
	fcc (0.197785)
	fhi (0.169578)
	cag (0.151194)
	pgl (0.118483)