Non-Coding RNA Search

Ss1.1-rpgl10_o7.5

Sequence:


               
               GATCCTAGCTTCAGAAATTAGAAGCAATTTTCCTAAAAGACACTTCTTGATCCCTACTAG
CTATAAAGGCAAATTCAAGCGGCGACCTAGAGAGTTCCCAACTGCTTATGACCTCGAGAT
AGCAAAGAGTGAAAAGGAGCCTCTCCACGTGGTGGCCACCAAAGCCTTTCATCCCCCCCA
CGACGAGCTGACATCTGTATCTGTTGGGGACCAGTTTCTAGTGCATCATTCACAGAGGAC
TGAAGTCCTCTGTGAAGGAATCAAAAAAGTGGTGAATGTTCTGGCTTGTGAAAGAATCCT
CAAAAAATCCTATGAGGCAGCACTGCTCCCTTTGTACATGGAAGGAGATTTTGTAGAGGT
GATTCATGATAAGAAGCAGTACCAGATATCTGAGCTCTGTGCACAGTTCCGCTTGCCCTT
TAATGTGAAGGTATCTGTGAGGGATCTTTCCATTGAAGATGACATCTTGGCTGCTACACC
GGACTGCAGTTGGAGGAAGCTATCACAGACTCTTATCTACTCATAAGCGACTTTGCCAAC
CCCAAGGAGTGCTGGGAAATTCCTGTGGGCCGCTTGAATATGACCGTTCAGTTGGTTAGT
AATTTGTCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCTAGCTTCAGAAATTAGAAGCAATTTTCCTAAAAGACACTTCTTGATCCCTACTAG
CTATAAAGGCAAATTCAAGCGGCGACCTAGAGAGTTCCCAACTGCTTATGACCTCGAGAT
AGCAAAGAGTGAAAAGGAGCCTCTCCACGTGGTGGCCACCAAAGCCTTTCATCCCCCCCA
CGACGAGCTGACATCTGTATCTGTTGGGGACCAGTTTCTAGTGCATCATTCACAGAGGAC
TGAAGTCCTCTGTGAAGGAATCAAAAAAGTGGTGAATGTTCTGGCTTGTGAAAGAATCCT
CAAAAAATCCTATGAGGCAGCACTGCTCCCTTTGTACATGGAAGGAGATTTTGTAGAGGT
GATTCATGATAAGAAGCAGTACCAGATATCTGAGCTCTGTGCACAGTTCCGCTTGCCCTT
TAATGTGAAGGTATCTGTGAGGGATCTTTCCATTGAAGATGACATCTTGGCTGCTACACC
GGACTGCAGTTGGAGGAAGCTATCACAGACTCTTATCTACTCATAAGCGACTTTGCCAAC
CCCAAGGAGTGCTGGGAAATTCCTGTGGGCCGCTTGAATATGACCGTTCAGTTGGTTAGT
AATTTGTCTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               160-279, + strand, RNAz p=0.705854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, + strand, RNAz p=0.705854

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK128377, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK128377, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-611, gnl|bosTau2|chr13 (46061260-46061871)
               

               
               1-611, gnl|canFam2|chr1 (69507399-69508090)
               

               
               1-611, gnl|danRer3|chr20 (1926500-1925818)
               

               
               1-611, gnl|dasNov1|scaffold_13842 (88679-89370)
               

               
               1-611, gnl|echTel1|scaffold_132166 (151-842)
               

               
               1-611, gnl|galGal2|chr3 (57343685-57342994)
               

               
               1-611, gnl|hg17|chr6 (128175791-128176482)
               

               
               1-611, gnl|Hg17|chr6 (128176528-128175917)
               

               
               1-611, gnl|loxAfr1|scaffold_2038 (98281-98972)
               

               
               1-611, gnl|mm7|chr10 (28563352-28562658)
               

               
               1-611, gnl|Mm7|chr10 (28562610-28563224)
               

               
               1-611, gnl|monDom2|scaffold_0 (85536494-85535803)
               

               
               1-611, gnl|oryCun1|scaffold_172700 (13555-12864)
               

               
               1-611, gnl|panTro1|chr5 (130710296-130710987)
               

               
               1-611, gnl|rheMac2|chr4 (136076107-136075416)
               

               
               1-611, gnl|rn3|chr1 (17151109-17151803)
               

               
               1-611, gnl|xenTro1|scaffold_926 (288004-288694)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-611, gnl|bosTau2|chr13 (46061260-46061871)
               

               
               1-611, gnl|canFam2|chr1 (69507399-69508090)
               

               
               1-611, gnl|danRer3|chr20 (1926500-1925818)
               

               
               1-611, gnl|dasNov1|scaffold_13842 (88679-89370)
               

               
               1-611, gnl|echTel1|scaffold_132166 (151-842)
               

               
               1-611, gnl|galGal2|chr3 (57343685-57342994)
               

               
               1-611, gnl|hg17|chr6 (128175791-128176482)
               

               
               1-611, gnl|Hg17|chr6 (128176528-128175917)
               

               
               1-611, gnl|loxAfr1|scaffold_2038 (98281-98972)
               

               
               1-611, gnl|mm7|chr10 (28563352-28562658)
               

               
               1-611, gnl|Mm7|chr10 (28562610-28563224)
               

               
               1-611, gnl|monDom2|scaffold_0 (85536494-85535803)
               

               
               1-611, gnl|oryCun1|scaffold_172700 (13555-12864)
               

               
               1-611, gnl|panTro1|chr5 (130710296-130710987)
               

               
               1-611, gnl|rheMac2|chr4 (136076107-136075416)
               

               
               1-611, gnl|rn3|chr1 (17151109-17151803)
               

               
               1-611, gnl|xenTro1|scaffold_926 (288004-288694)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.229595)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               pgl (0.118483)

	1-611, gnl\|bosTau2\|chr13 (46061260-46061871)
	1-611, gnl\|canFam2\|chr1 (69507399-69508090)
	1-611, gnl\|danRer3\|chr20 (1926500-1925818)
	1-611, gnl\|dasNov1\|scaffold_13842 (88679-89370)
	1-611, gnl\|echTel1\|scaffold_132166 (151-842)
	1-611, gnl\|galGal2\|chr3 (57343685-57342994)
	1-611, gnl\|hg17\|chr6 (128175791-128176482)
	1-611, gnl\|Hg17\|chr6 (128176528-128175917)
	1-611, gnl\|loxAfr1\|scaffold_2038 (98281-98972)
	1-611, gnl\|mm7\|chr10 (28563352-28562658)
	1-611, gnl\|Mm7\|chr10 (28562610-28563224)
	1-611, gnl\|monDom2\|scaffold_0 (85536494-85535803)
	1-611, gnl\|oryCun1\|scaffold_172700 (13555-12864)
	1-611, gnl\|panTro1\|chr5 (130710296-130710987)
	1-611, gnl\|rheMac2\|chr4 (136076107-136075416)
	1-611, gnl\|rn3\|chr1 (17151109-17151803)
	1-611, gnl\|xenTro1\|scaffold_926 (288004-288694)