Ss1.1-rpgl11_e23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGACCCAGCCAGAGGATGGGCCTGGACCAGAGCACTGCTAGGACTCTGTGCTAAAGAA ATCCATTTGTGTGGAGAATCTGCTGCTATTGACCTGGTTACTGAGCTTATGTACACAACT GGGGAAGATGTGGAGGTTCGAACCTACAAGAGGCTTACCCCCATTTCTGTGCTGGATCAC GCACTAGAATCTTTAGACAACCTTCGGCCTGGGGACTGCATTGTCTGTTTTAGCAAGAAT GATATTTATTCTGTGAGTCGACAGATTGAAATTCGGGGATTGGAATCAGCTGTTATATAT GGCAGTCTCCCACCTGGGACAAAACTTGCTCAAGCAAAAAAGTTTAATGATCCTGATGAT CCATGCAAAATCCTGGTTGCTACAGATGCGATTGGCATGGGACTTAATTTGAGCATAAGA AGAATTATTTTTTACTCCCTTATGAAGCCCAGTATCAATGAAAAGGGAGAGAGAGAAATA GAACCAATCACCACTTCTCAAGCCTTGCAGATTGCTGGCAGGGCTGGCAGATTCAGTTCG AAATTTAAAGAAGGAGAGGTTACAACAATGCATCGAGAAGATCTCAATTTATTAAAGGAA ATTTTGAGTAGACCTGTGGATCCTATAAAGGTAGGGTGTAACATAGTAATTGCTTCTTCT CTGTGGGAAACAGTGATTCCTTCCTTCACCCTCTTTTTAGACTTGCCTCAGACACCTGGA AACAAATAAGCCAAAGAAAATTTTGTGCCATGAAAATCATGTCAAGCTTTTCATGAAGAT GGCACCGAAGGCGAAGAAGGAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGACCCAGCCAGAGGATGGGCCTGGACCAGAGCACTGCTAGGACTCTGTGCTAAAGAA ATCCATTTGTGTGGAGAATCTGCTGCTATTGACCTGGTTACTGAGCTTATGTACACAACT GGGGAAGATGTGGAGGTTCGAACCTACAAGAGGCTTACCCCCATTTCTGTGCTGGATCAC GCACTAGAATCTTTAGACAACCTTCGGCCTGGGGACTGCATTGTCTGTTTTAGCAAGAAT GATATTTATTCTGTGAGTCGACAGATTGAAATTCGGGGATTGGAATCAGCTGTTATATAT GGCAGTCTCCCACCTGGGACAAAACTTGCTCAAGCAAAAAAGTTTAATGATCCTGATGAT CCATGCAAAATCCTGGTTGCTACAGATGCGATTGGCATGGGACTTAATTTGAGCATAAGA AGAATTATTTTTTACTCCCTTATGAAGCCCAGTATCAATGAAAAGGGAGAGAGAGAAATA GAACCAATCACCACTTCTCAAGCCTTGCAGATTGCTGGCAGGGCTGGCAGATTCAGTTCG AAATTTAAAGAAGGAGAGGTTACAACAATGCATCGAGAAGATCTCAATTTATTAAAGGAA ATTTTGAGTAGACCTGTGGATCCTATAAAGGTAGGGTGTAACATAGTAATTGCTTCTTCT CTGTGGGAAACAGTGATTCCTTCCTTCACCCTCTTTTTAGACTTGCCTCAGACACCTGGA AACAAATAAGCCAAAGAAAATTTTGTGCCATGAAAATCATGTCAAGCTTTTCATGAAGAT GGCACCGAAGGCGAAGAAGGAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 411-609, + strand, RNAz p=0.845138 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 411-609, + strand, RNAz p=0.845138 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 134-317, gnl|bosTau2|chr28 (20329313-20329130) | |
| 134-317, gnl|canFam2|chr4 (23537732-23537930) | |
| 134-317, gnl|danRer3|chr13 (26648088-26647892) | |
| 134-317, gnl|echTel1|scaffold_249567 (1661-1859) | |
| 134-317, gnl|fr1|chrUn (220544128-220544324) | |
| 134-317, gnl|galGal2|chr6 (10135694-10135893) | |
| 134-317, gnl|hg17|chr10 (70628121-70628319) | |
| 134-317, gnl|Hg17|chr10 (70628132-70628315) | |
| 134-317, gnl|mm7|chr10 (61954579-61954381) | |
| 134-317, gnl|Mm7|chr10 (61954566-61954383) | |
| 134-317, gnl|monDom2|scaffold_242 (224684-224491) | |
| 134-317, gnl|oryCun1|scaffold_106663 (28291-28093) | |
| 134-317, gnl|panTro1|chr8 (71780569-71780767) | |
| 134-317, gnl|rheMac2|chr9 (67826607-67826409) | |
| 134-317, gnl|rn3|chr20 (29702189-29701991) | |
| 134-317, gnl|tetNig1|chr5 (3754792-3754597) | |
| 134-317, gnl|xenTro1|scaffold_228 (743366-743564) | |
| 411-766, gnl|bosTau2|chr28 (20326369-20326004) | |
| 411-766, gnl|canFam2|chr4 (23539774-23540009) | |
| 411-766, gnl|danRer3|chr13 (26646069-26645833) | |
| 411-766, gnl|dasNov1|scaffold_44964 (4104-3869) | |
| 411-766, gnl|echTel1|scaffold_210794 (5907-5698) | |
| 411-766, gnl|fr1|chrUn (220544611-220544938) | |
| 411-766, gnl|galGal2|chr6 (10136882-10137114) | |
| 411-766, gnl|hg17|chr10 (70630037-70630272) | |
| 411-766, gnl|Hg17|chr10 (70630042-70630395) | |
| 411-766, gnl|mm7|chr10 (61953359-61953124) | |
| 411-766, gnl|Mm7|chr10 (61953352-61952999) | |
| 411-766, gnl|monDom2|scaffold_242 (223522-223292) | |
| 411-766, gnl|oryCun1|scaffold_106663 (26068-25833) | |
| 411-766, gnl|panTro1|chr8 (71782485-71782720) | |
| 411-766, gnl|rheMac2|chr9 (67824737-67824502) | |
| 411-766, gnl|rn3|chr20 (29700188-29699953) | |
| 411-766, gnl|tetNig1|chr5 (3754290-3753968) | |
| 411-766, gnl|xenTro1|scaffold_228 (745626-745859) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 134-317, gnl|bosTau2|chr28 (20329313-20329130) | |
| 134-317, gnl|canFam2|chr4 (23537732-23537930) | |
| 134-317, gnl|danRer3|chr13 (26648088-26647892) | |
| 134-317, gnl|echTel1|scaffold_249567 (1661-1859) | |
| 134-317, gnl|fr1|chrUn (220544128-220544324) | |
| 134-317, gnl|galGal2|chr6 (10135694-10135893) | |
| 134-317, gnl|hg17|chr10 (70628121-70628319) | |
| 134-317, gnl|Hg17|chr10 (70628132-70628315) | |
| 134-317, gnl|mm7|chr10 (61954579-61954381) | |
| 134-317, gnl|Mm7|chr10 (61954566-61954383) | |
| 134-317, gnl|monDom2|scaffold_242 (224684-224491) | |
| 134-317, gnl|oryCun1|scaffold_106663 (28291-28093) | |
| 134-317, gnl|panTro1|chr8 (71780569-71780767) | |
| 134-317, gnl|rheMac2|chr9 (67826607-67826409) | |
| 134-317, gnl|rn3|chr20 (29702189-29701991) | |
| 134-317, gnl|tetNig1|chr5 (3754792-3754597) | |
| 134-317, gnl|xenTro1|scaffold_228 (743366-743564) | |
| 411-766, gnl|bosTau2|chr28 (20326369-20326004) | |
| 411-766, gnl|canFam2|chr4 (23539774-23540009) | |
| 411-766, gnl|danRer3|chr13 (26646069-26645833) | |
| 411-766, gnl|dasNov1|scaffold_44964 (4104-3869) | |
| 411-766, gnl|echTel1|scaffold_210794 (5907-5698) | |
| 411-766, gnl|fr1|chrUn (220544611-220544938) | |
| 411-766, gnl|galGal2|chr6 (10136882-10137114) | |
| 411-766, gnl|hg17|chr10 (70630037-70630272) | |
| 411-766, gnl|Hg17|chr10 (70630042-70630395) | |
| 411-766, gnl|mm7|chr10 (61953359-61953124) | |
| 411-766, gnl|Mm7|chr10 (61953352-61952999) | |
| 411-766, gnl|monDom2|scaffold_242 (223522-223292) | |
| 411-766, gnl|oryCun1|scaffold_106663 (26068-25833) | |
| 411-766, gnl|panTro1|chr8 (71782485-71782720) | |
| 411-766, gnl|rheMac2|chr9 (67824737-67824502) | |
| 411-766, gnl|rn3|chr20 (29700188-29699953) | |
| 411-766, gnl|tetNig1|chr5 (3754290-3753968) | |
| 411-766, gnl|xenTro1|scaffold_228 (745626-745859) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| lun (0.150489) |