Non-Coding RNA Search

Ss1.1-rpgl13_f22.5

Sequence:


               
               GGTGAGTCCAAGATAACTGTCACAGTTTGGAGGTTTGTGGGTCTTTCTGAAAAAACTAAT
CAATATCTAGTAGCATTGAGGTTGTACTTACATGGTAAGTTGAATGGATTGTTTATTAAA
GAGGAAAACTAGGTTATTAACAACAGTTTATTAACTGTCAGAATTGGTGGAACCTTTTTT
TTAAGTCTTAACACATTTTTTAAAAAAATGTATAAAAGTAATATGTTGTAGTAGTAGGAT
TATATACTCTGGCTGAAAATCCCAAGTACTGTGGTTTTGTTTAGTGGAAAACTCTGGAGG
TTAAAATATAGAATATGAGAAAAGGCTTTTTTATAGTGGGCATAATCGTGTGGAAAATGA
CCCATGTGAATAAAAATACTCGTAGTTCCAGAGATTTTGGTTACATCTGGTGCTTGGATC
AAATTTAAAAATGGAAGGTGAGATTTGCATGAGGCTGTTAAAAAGCTTAGTAATAAATGC
AAGGCCAGCTGGTGGAGAAGTGAGGTGGAATGGAGCTTGTTTATAGATTTTCTGATAACA
ATTAATTATAAGAAATGTGCTTTATAGATTAAGATTTATTGAAGTATAAATATGTAGTAA
TGATATAATGTATTTTAAGTTATACAAGAATATGTAGGGACTTTTGTTGGGGTCTTTTTC
TCTTTGTGGCTGAGAGGAAATAAGTCAATGTCCAATAAAGCTATAAATTCCTCTGCTCTA
AGGTAAAACAATTTTGGGTTGATTGATTTATTTATTTTAACTGGCTTCTTTCCAAGTAGG
TTTTGAGGTGCATATTTGGAATACTGCTGGAATAACAATTCTTGTATCAGAGTAGGTAAG
AAGAGAGCAACCTCTTGGTGGCTAGAATTTCACGCTTTTTTAGATCTTACATCTTCCCTG
TGATACATATGTCATAAATGCCAAAGATGCTTGGTATAAGTGAGAGCTTAGAAAAGTGTA
AGAGTTGGCAAATATGAATTTGTCTTGCCATCTCTTGATACCTGTGCATTGTTTAGTAAG
GATTCTGAAGCTAAGGGAAGGCTCTGTGGGGAAAATGGGCTGGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGTCCAAGATAACTGTCACAGTTTGGAGGTTTGTGGGTCTTTCTGAAAAAACTAAT
CAATATCTAGTAGCATTGAGGTTGTACTTACATGGTAAGTTGAATGGATTGTTTATTAAA
GAGGAAAACTAGGTTATTAACAACAGTTTATTAACTGTCAGAATTGGTGGAACCTTTTTT
TTAAGTCTTAACACATTTTTTAAAAAAATGTATAAAAGTAATATGTTGTAGTAGTAGGAT
TATATACTCTGGCTGAAAATCCCAAGTACTGTGGTTTTGTTTAGTGGAAAACTCTGGAGG
TTAAAATATAGAATATGAGAAAAGGCTTTTTTATAGTGGGCATAATCGTGTGGAAAATGA
CCCATGTGAATAAAAATACTCGTAGTTCCAGAGATTTTGGTTACATCTGGTGCTTGGATC
AAATTTAAAAATGGAAGGTGAGATTTGCATGAGGCTGTTAAAAAGCTTAGTAATAAATGC
AAGGCCAGCTGGTGGAGAAGTGAGGTGGAATGGAGCTTGTTTATAGATTTTCTGATAACA
ATTAATTATAAGAAATGTGCTTTATAGATTAAGATTTATTGAAGTATAAATATGTAGTAA
TGATATAATGTATTTTAAGTTATACAAGAATATGTAGGGACTTTTGTTGGGGTCTTTTTC
TCTTTGTGGCTGAGAGGAAATAAGTCAATGTCCAATAAAGCTATAAATTCCTCTGCTCTA
AGGTAAAACAATTTTGGGTTGATTGATTTATTTATTTTAACTGGCTTCTTTCCAAGTAGG
TTTTGAGGTGCATATTTGGAATACTGCTGGAATAACAATTCTTGTATCAGAGTAGGTAAG
AAGAGAGCAACCTCTTGGTGGCTAGAATTTCACGCTTTTTTAGATCTTACATCTTCCCTG
TGATACATATGTCATAAATGCCAAAGATGCTTGGTATAAGTGAGAGCTTAGAAAAGTGTA
AGAGTTGGCAAATATGAATTTGTCTTGCCATCTCTTGATACCTGTGCATTGTTTAGTAAG
GATTCTGAAGCTAAGGGAAGGCTCTGTGGGGAAAATGGGCTGGGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               288-401, - strand, RNAz p=0.829976

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               288-401, - strand, RNAz p=0.829976

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-907, gnl|bosTau2|chr24 (17014806-17015722)
               

               
               1-907, gnl|Hg17|chr18 (31169911-31169009)
               

               
               1-907, gnl|Mm7|chr18 (24397645-24396780)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-907, gnl|bosTau2|chr24 (17014806-17015722)
               

               
               1-907, gnl|Hg17|chr18 (31169911-31169009)
               

               
               1-907, gnl|Mm7|chr18 (24397645-24396780)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               gul (0.177588)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	1-907, gnl\|bosTau2\|chr24 (17014806-17015722)
	1-907, gnl\|Hg17\|chr18 (31169911-31169009)
	1-907, gnl\|Mm7\|chr18 (24397645-24396780)

	gul (0.177588)
	lun (0.150489)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)