Non-Coding RNA Search

Ss1.1-rpgl13_h3.5

Sequence:


               
               AGAGTAATGAATTTTCGACATTTCCAAGAGTATAATCATCTATTTTAAATACTGTAAATC
CTGTTATATCTCACTTGGATAGGTATCTAAAAAACAATTATTACATTCCCTTGCATTTAA
ATTACCACTGAAATTGGAAATAATCTTTATTTAATATAACTGTATTTAACACCAGATGGG
AGGGGAAATAACTAAATGAAAATTGTTCACGTAAATGTGATAGGAGTGGGGAAAGCAGTA
TTTCTTGACATGTGGCCTGTCACTCAGGAAAGAAAAGACCCATCATATCCAAAATGCCAG
CTTGGATATTCCCTTGCCACCCACTTCACGAACAGACATACCACATGGCATTAAATGCTG
CAACCTTTCCTAAAAATGCCACTTGGATTGGTCCACTGTGGTGAGTGTGTAGGAACTCTT
GGTCTGTCTCTTAAGTTTGCAATTTTTTAGGGGAAGAATCCAGTAAGTAGCACTAGCTAA
ATTTTGCCCTCAGATATTTGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGTAATGAATTTTCGACATTTCCAAGAGTATAATCATCTATTTTAAATACTGTAAATC
CTGTTATATCTCACTTGGATAGGTATCTAAAAAACAATTATTACATTCCCTTGCATTTAA
ATTACCACTGAAATTGGAAATAATCTTTATTTAATATAACTGTATTTAACACCAGATGGG
AGGGGAAATAACTAAATGAAAATTGTTCACGTAAATGTGATAGGAGTGGGGAAAGCAGTA
TTTCTTGACATGTGGCCTGTCACTCAGGAAAGAAAAGACCCATCATATCCAAAATGCCAG
CTTGGATATTCCCTTGCCACCCACTTCACGAACAGACATACCACATGGCATTAAATGCTG
CAACCTTTCCTAAAAATGCCACTTGGATTGGTCCACTGTGGTGAGTGTGTAGGAACTCTT
GGTCTGTCTCTTAAGTTTGCAATTTTTTAGGGGAAGAATCCAGTAAGTAGCACTAGCTAA
ATTTTGCCCTCAGATATTTGGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11493403|gb|AAG35476.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11493403|gb|AAG35476.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-425, - strand, RNAz p=0.793626

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-425, - strand, RNAz p=0.793626

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-503, gnl|bosTau2|chr14 (44499928-44500432)
               

               
               1-503, gnl|canFam2|chr29 (40904098-40904583)
               

               
               1-503, gnl|dasNov1|scaffold_8530 (9589-9109)
               

               
               1-503, gnl|echTel1|scaffold_314609 (51048-50559)
               

               
               1-503, gnl|hg17|chr8 (93966002-93966492)
               

               
               1-503, gnl|Hg17|chr8 (93966023-93966532)
               

               
               1-503, gnl|loxAfr1|scaffold_39980 (22685-23170)
               

               
               1-503, gnl|mm7|chr4 (12909706-12909219)
               

               
               1-503, gnl|Mm7|chr4 (12909683-12909177)
               

               
               1-503, gnl|monDom2|scaffold_3 (73289994-73289508)
               

               
               1-503, gnl|oryCun1|scaffold_145384 (15103-15578)
               

               
               1-503, gnl|panTro1|chr7 (96170353-96170845)
               

               
               1-503, gnl|rheMac2|chr8 (95482725-95483212)
               

               
               1-503, gnl|rn3|chr5 (27292579-27292108)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr14 (44499928-44500432)
               

               
               1-503, gnl|canFam2|chr29 (40904098-40904583)
               

               
               1-503, gnl|dasNov1|scaffold_8530 (9589-9109)
               

               
               1-503, gnl|echTel1|scaffold_314609 (51048-50559)
               

               
               1-503, gnl|hg17|chr8 (93966002-93966492)
               

               
               1-503, gnl|Hg17|chr8 (93966023-93966532)
               

               
               1-503, gnl|loxAfr1|scaffold_39980 (22685-23170)
               

               
               1-503, gnl|mm7|chr4 (12909706-12909219)
               

               
               1-503, gnl|Mm7|chr4 (12909683-12909177)
               

               
               1-503, gnl|monDom2|scaffold_3 (73289994-73289508)
               

               
               1-503, gnl|oryCun1|scaffold_145384 (15103-15578)
               

               
               1-503, gnl|panTro1|chr7 (96170353-96170845)
               

               
               1-503, gnl|rheMac2|chr8 (95482725-95483212)
               

               
               1-503, gnl|rn3|chr5 (27292579-27292108)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)

	1-503, gnl\|bosTau2\|chr14 (44499928-44500432)
	1-503, gnl\|canFam2\|chr29 (40904098-40904583)
	1-503, gnl\|dasNov1\|scaffold_8530 (9589-9109)
	1-503, gnl\|echTel1\|scaffold_314609 (51048-50559)
	1-503, gnl\|hg17\|chr8 (93966002-93966492)
	1-503, gnl\|Hg17\|chr8 (93966023-93966532)
	1-503, gnl\|loxAfr1\|scaffold_39980 (22685-23170)
	1-503, gnl\|mm7\|chr4 (12909706-12909219)
	1-503, gnl\|Mm7\|chr4 (12909683-12909177)
	1-503, gnl\|monDom2\|scaffold_3 (73289994-73289508)
	1-503, gnl\|oryCun1\|scaffold_145384 (15103-15578)
	1-503, gnl\|panTro1\|chr7 (96170353-96170845)
	1-503, gnl\|rheMac2\|chr8 (95482725-95483212)
	1-503, gnl\|rn3\|chr5 (27292579-27292108)

	mgp (0.230681)
	sag (0.182715)
	gul (0.177588)
	ski (0.146735)
	nca (0.136874)
	pgl (0.118483)