Ss1.1-rpgl13_k11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTACAGATTGTGTGATACAAGACCAAGGCAACGCCAGTCCTCGATACATCCGTTGCACAA CGTACTGTTTTCCATGCACATCAGATATGGCCAAGCAGGCCCAGATTCCATTAGCTGCCA TCATCAAACCCTTTGCCACAATTCCTTCGAATGAGCATCCTCATCATGTTCATGTTATAC AAACTCAACGCACAGGATCAGAACCAAGAATAGCCAGACACCCCTCTACTTGGTCAATCA TGGGGAGACTGGACCAGTCAGATGCAACAGGTGCAAAGCCTACATGTGCCCGTTCATGCA GTTCATTGAGGGAGGAAGGAGGTACCAGTGTGGATTTTGCAGCTGTGTGAATGATGGTAA GTGGCAGCAACTCATGCGCTCAGGGACAGCTCTGTAGTAAACAGAATACAAGCTACATTT CTTGGCTTGGGAAAAAATATATGTATCTGGAGTTCCCGTCGTGGCTCAGTGGTTAGCGAA TCCGACTAGAATCCATGAGGTTGCGGGTTCAATCCCTGTCCTTGCTCAGTGGGTTGAGGA TCTGGCGTTGCCATGAGCTGTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTACAGATTGTGTGATACAAGACCAAGGCAACGCCAGTCCTCGATACATCCGTTGCACAA CGTACTGTTTTCCATGCACATCAGATATGGCCAAGCAGGCCCAGATTCCATTAGCTGCCA TCATCAAACCCTTTGCCACAATTCCTTCGAATGAGCATCCTCATCATGTTCATGTTATAC AAACTCAACGCACAGGATCAGAACCAAGAATAGCCAGACACCCCTCTACTTGGTCAATCA TGGGGAGACTGGACCAGTCAGATGCAACAGGTGCAAAGCCTACATGTGCCCGTTCATGCA GTTCATTGAGGGAGGAAGGAGGTACCAGTGTGGATTTTGCAGCTGTGTGAATGATGGTAA GTGGCAGCAACTCATGCGCTCAGGGACAGCTCTGTAGTAAACAGAATACAAGCTACATTT CTTGGCTTGGGAAAAAATATATGTATCTGGAGTTCCCGTCGTGGCTCAGTGGTTAGCGAA TCCGACTAGAATCCATGAGGTTGCGGGTTCAATCCCTGTCCTTGCTCAGTGGGTTGAGGA TCTGGCGTTGCCATGAGCTGTGGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 246-364, + strand, RNAz p=0.592927 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 246-364, + strand, RNAz p=0.592927 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 26-155, gnl|bosTau2|chr7 (44603172-44603301) | |
| 26-155, gnl|Hg17|chr4 (120076570-120076441) | |
| 26-155, gnl|Mm7|chr3 (123144420-123144549) | |
| 216-364, gnl|bosTau2|chr7 (44633415-44633563) | |
| 216-364, gnl|canFam2|chr32 (40657613-40657801) | |
| 216-364, gnl|danRer3|chrUn (117523322-117523514) | |
| 216-364, gnl|dasNov1|scaffold_4083 (19985-19794) | |
| 216-364, gnl|echTel1|scaffold_324772 (115618-115427) | |
| 216-364, gnl|fr1|chrUn (136144456-136144639) | |
| 216-364, gnl|galGal2|chr4 (55481619-55481449) | |
| 216-364, gnl|hg17|chr4 (120046903-120047095) | |
| 216-364, gnl|Hg17|chr4 (120047071-120046923) | |
| 216-364, gnl|loxAfr1|scaffold_9301 (42501-42313) | |
| 216-364, gnl|mm7|chr3 (123166305-123166115) | |
| 216-364, gnl|Mm7|chr3 (123166135-123166283) | |
| 216-364, gnl|monDom2|scaffold_32 (8595517-8595325) | |
| 216-364, gnl|oryCun1|scaffold_187656 (11724-11915) | |
| 216-364, gnl|panTro1|chr3 (136520614-136520806) | |
| 216-364, gnl|rheMac2|chr5 (111351394-111351586) | |
| 216-364, gnl|rn3|chr2 (220009375-220009185) | |
| 216-364, gnl|tetNig1|chrUn_random (56582296-56582135) | |
| 216-364, gnl|xenTro1|scaffold_310 (339702-339875) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-155, gnl|bosTau2|chr7 (44603172-44603301) | |
| 26-155, gnl|Hg17|chr4 (120076570-120076441) | |
| 26-155, gnl|Mm7|chr3 (123144420-123144549) | |
| 216-364, gnl|bosTau2|chr7 (44633415-44633563) | |
| 216-364, gnl|canFam2|chr32 (40657613-40657801) | |
| 216-364, gnl|danRer3|chrUn (117523322-117523514) | |
| 216-364, gnl|dasNov1|scaffold_4083 (19985-19794) | |
| 216-364, gnl|echTel1|scaffold_324772 (115618-115427) | |
| 216-364, gnl|fr1|chrUn (136144456-136144639) | |
| 216-364, gnl|galGal2|chr4 (55481619-55481449) | |
| 216-364, gnl|hg17|chr4 (120046903-120047095) | |
| 216-364, gnl|Hg17|chr4 (120047071-120046923) | |
| 216-364, gnl|loxAfr1|scaffold_9301 (42501-42313) | |
| 216-364, gnl|mm7|chr3 (123166305-123166115) | |
| 216-364, gnl|Mm7|chr3 (123166135-123166283) | |
| 216-364, gnl|monDom2|scaffold_32 (8595517-8595325) | |
| 216-364, gnl|oryCun1|scaffold_187656 (11724-11915) | |
| 216-364, gnl|panTro1|chr3 (136520614-136520806) | |
| 216-364, gnl|rheMac2|chr5 (111351394-111351586) | |
| 216-364, gnl|rn3|chr2 (220009375-220009185) | |
| 216-364, gnl|tetNig1|chrUn_random (56582296-56582135) | |
| 216-364, gnl|xenTro1|scaffold_310 (339702-339875) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |