Non-Coding RNA Search

Ss1.1-rpgl14_a18.5

Sequence:


               
               TGGTCTCCGTTTGTGCTGAGGGCCCCTTCTGGGTTTCCTGACCTGTGTTTGTTTTCCTGC
CTGGGATCCGGAATCTCAGAGCCTGATTACTTTCCATTCTGATCCACATACTAGCCCTGG
CCCTGGTTTTTTCTGCTTCTGGCCAGGTTGTATCACTGCACTGCCAGCCCCTCTGATCTG
CCCCTCCCATTCCTAGGGGACTGTCAAGTCTAAACCCTTGTTTCCTGATGTTATTAACAC
ATTTTTTGGTTACCGGTTGGGTTGGCCGACAAAGCAGTTGGGCACGCTCAGCTTTAATCG
TTTTAACTGTAAAATCAGGATAAAACCTGCTGTCCCATCAACCTTTTATTTGTGAGGCTC
AAAGTTTTTATGTGTGAAAATACCTTGCAAATTCCTGTAAAGAACTAGGCGAATAAGGAT
GTCCTCCAAATTTAACCCGCCCACAAAATGCCCATTAACCTTTCTCATGCTTTTAGACTG
ATTACGGAATATAAATAGCAAAGTCAATTTTAATGAAATTAGATCTTCGACTTCACTTCG
GGTTAAGGAGGCCTCTTTTTTTCCTGCTATTCGATGAACCTTATGCGAAGGGAACGAGGT
CGGCGGGAGGCCTGGCCAAGGGCGGGGTGAAGACTGAGCCGACTCAGCTCTTCCGCTCCA
AGAGGAAGTCGCGAGTGCTGGCGTCTCTGGTCACCATGGTGACGGGACCAACTTCCGTCC
CACTCACCTGCCTCTAGCCCCGCGAGGCGCACCATGGCAACCAGGCTTGTGCGTCGCGGA
AGCTGGTCACCCGGTTTGCAGTGGTTGGGGAAACGGCGGACGCCGTCCCCCATCCCTAAG
GGACTCGAAAATGTACAGTCAGCGGTTTGGCATCGTACAGCGGGAAGTTAAGGGCCCCAC
TCCCAAAGTGGTGATCATGAGAGCCAAGCCTCCTAAAGGCCAAGGGGCAGAGCAACATCT
GGAAAGAATCCGACACAGCCATCAGAAACATCATGTTATTTTGGCTTCCACCAAGTCAAA
TGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACCGCAAGTTTGTAGACAG
TCTTGTGAAAGCAAGAATCAAGGATGCCATGCAAGGGTTTATCATCAACACTGAAGAAAG
ACGAAATAAGTTAGGCTCACAAACCAGCTGACCCAGACTATGAAACATTCCTAAAACCAC
AGTCAGAGATTGACCTATCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCTCCGTTTGTGCTGAGGGCCCCTTCTGGGTTTCCTGACCTGTGTTTGTTTTCCTGC
CTGGGATCCGGAATCTCAGAGCCTGATTACTTTCCATTCTGATCCACATACTAGCCCTGG
CCCTGGTTTTTTCTGCTTCTGGCCAGGTTGTATCACTGCACTGCCAGCCCCTCTGATCTG
CCCCTCCCATTCCTAGGGGACTGTCAAGTCTAAACCCTTGTTTCCTGATGTTATTAACAC
ATTTTTTGGTTACCGGTTGGGTTGGCCGACAAAGCAGTTGGGCACGCTCAGCTTTAATCG
TTTTAACTGTAAAATCAGGATAAAACCTGCTGTCCCATCAACCTTTTATTTGTGAGGCTC
AAAGTTTTTATGTGTGAAAATACCTTGCAAATTCCTGTAAAGAACTAGGCGAATAAGGAT
GTCCTCCAAATTTAACCCGCCCACAAAATGCCCATTAACCTTTCTCATGCTTTTAGACTG
ATTACGGAATATAAATAGCAAAGTCAATTTTAATGAAATTAGATCTTCGACTTCACTTCG
GGTTAAGGAGGCCTCTTTTTTTCCTGCTATTCGATGAACCTTATGCGAAGGGAACGAGGT
CGGCGGGAGGCCTGGCCAAGGGCGGGGTGAAGACTGAGCCGACTCAGCTCTTCCGCTCCA
AGAGGAAGTCGCGAGTGCTGGCGTCTCTGGTCACCATGGTGACGGGACCAACTTCCGTCC
CACTCACCTGCCTCTAGCCCCGCGAGGCGCACCATGGCAACCAGGCTTGTGCGTCGCGGA
AGCTGGTCACCCGGTTTGCAGTGGTTGGGGAAACGGCGGACGCCGTCCCCCATCCCTAAG
GGACTCGAAAATGTACAGTCAGCGGTTTGGCATCGTACAGCGGGAAGTTAAGGGCCCCAC
TCCCAAAGTGGTGATCATGAGAGCCAAGCCTCCTAAAGGCCAAGGGGCAGAGCAACATCT
GGAAAGAATCCGACACAGCCATCAGAAACATCATGTTATTTTGGCTTCCACCAAGTCAAA
TGAGCGGGATCGCTTGAAAGCTGAGTGGGACCAGCACAATGACCGCAAGTTTGTAGACAG
TCTTGTGAAAGCAAGAATCAAGGATGCCATGCAAGGGTTTATCATCAACACTGAAGAAAG
ACGAAATAAGTTAGGCTCACAAACCAGCTGACCCAGACTATGAAACATTCCTAAAACCAC
AGTCAGAGATTGACCTATCGAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               414-919, gnl|bosTau2|chr24 (37190104-37190602)
               

               
               414-919, gnl|Hg17|chr18 (46047212-46046704)
               

               
               414-919, gnl|Mm7|chr18 (74677116-74677602)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               414-919, gnl|bosTau2|chr24 (37190104-37190602)
               

               
               414-919, gnl|Hg17|chr18 (46047212-46046704)
               

               
               414-919, gnl|Mm7|chr18 (74677116-74677602)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               sin (0.174948)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	414-919, gnl\|bosTau2\|chr24 (37190104-37190602)
	414-919, gnl\|Hg17\|chr18 (46047212-46046704)
	414-919, gnl\|Mm7\|chr18 (74677116-74677602)

	sin (0.174948)
	cki (0.165235)
	nmm (0.132802)
	pgl (0.118483)
	spc (0.113366)