Ss1.1-rpgl14_b13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGATGACCCAAGCCTGCCCAACGACGGGGGCATCACAGCTCTGCACAACGCGGTGTGT GCAGGTCACACGGAAATTGTGAAATTCCTGGTACAGTTTGGTGTCAATGTCAATGCTGCC GACAGTGACGGATGGACCCCGCTGCATTGCGCTGCCTCCTGTAACAACGTCCAGGTATGC AAGTTTTTGGTGGAGTCAGGGGCCGCTGTGTTCGCCATGACCTACAGTGACATGCAGACG GCCGCGGATAAGTGCGAAGAAATGGAGGAAGGCTACACCCAGTGCTCTCAGTTTCTCTAT GGCGTTCAGGAGAAAATGGGCATAATGAATAAAGGCGTCATTTATGCACTTTGGGACTAT GAGCCTCAGAACGATGACGAGCTGCCCATGAAGGAAGGGGACTGCATGACAATCGTCCGC CGGGAGGACGAAGATGAGATCGAGTGGTGGTGGGCCCGCCTGAACGATAAGGAGGGATAT GTTCCCCGAAACTTGTTGGGGCTATACCCACGAATTAAACCAAGGCAAAGGAGCTTGGCC TGAAACTCTGCAGAATTTTAGTTAATAAAGAATTCATCTCTTTTCCCACTAAGAAAAAAT AACATGATCGTTTGTGGCATAAATTTCACCGGACTGACTTTAGTGACAAAGTAACTTGAG AACGATGAAGAACGAACGGGCCCTGGAAGCAAAGGTTTGGAGAAGCCACTCAGCGGATCC CCTGAGCGGGCAGAGCGCTTCAGGAAGCTGCTCGCCAGCCGGGGACCCACGCTCTGAAAG ATACAGTGACAGTCCTGTTCTCGGCAAGAAGAAGGACCACTTATTGGGCTCCTGGGAGAC CAGCTTCACGTCCTGCCTAAGGTGGCGTTTTTCTTGGAGTTCCTGTTGTGGCTCAGTGGT AACGAACCCGACTTGCACCCGTGAGGATTCAAGTTCAATCCCTGGCCTCGCTCAGTGGGT TAAGGATCTGGCATTGCCATGAGCTGTGGTGTAGGTCACAGATGCCGCTCAGATCTGACG TTGCTGTGGCTGTGGTGTAGGCCGGCAGCTGTAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGATGACCCAAGCCTGCCCAACGACGGGGGCATCACAGCTCTGCACAACGCGGTGTGT GCAGGTCACACGGAAATTGTGAAATTCCTGGTACAGTTTGGTGTCAATGTCAATGCTGCC GACAGTGACGGATGGACCCCGCTGCATTGCGCTGCCTCCTGTAACAACGTCCAGGTATGC AAGTTTTTGGTGGAGTCAGGGGCCGCTGTGTTCGCCATGACCTACAGTGACATGCAGACG GCCGCGGATAAGTGCGAAGAAATGGAGGAAGGCTACACCCAGTGCTCTCAGTTTCTCTAT GGCGTTCAGGAGAAAATGGGCATAATGAATAAAGGCGTCATTTATGCACTTTGGGACTAT GAGCCTCAGAACGATGACGAGCTGCCCATGAAGGAAGGGGACTGCATGACAATCGTCCGC CGGGAGGACGAAGATGAGATCGAGTGGTGGTGGGCCCGCCTGAACGATAAGGAGGGATAT GTTCCCCGAAACTTGTTGGGGCTATACCCACGAATTAAACCAAGGCAAAGGAGCTTGGCC TGAAACTCTGCAGAATTTTAGTTAATAAAGAATTCATCTCTTTTCCCACTAAGAAAAAAT AACATGATCGTTTGTGGCATAAATTTCACCGGACTGACTTTAGTGACAAAGTAACTTGAG AACGATGAAGAACGAACGGGCCCTGGAAGCAAAGGTTTGGAGAAGCCACTCAGCGGATCC CCTGAGCGGGCAGAGCGCTTCAGGAAGCTGCTCGCCAGCCGGGGACCCACGCTCTGAAAG ATACAGTGACAGTCCTGTTCTCGGCAAGAAGAAGGACCACTTATTGGGCTCCTGGGAGAC CAGCTTCACGTCCTGCCTAAGGTGGCGTTTTTCTTGGAGTTCCTGTTGTGGCTCAGTGGT AACGAACCCGACTTGCACCCGTGAGGATTCAAGTTCAATCCCTGGCCTCGCTCAGTGGGT TAAGGATCTGGCATTGCCATGAGCTGTGGTGTAGGTCACAGATGCCGCTCAGATCTGACG TTGCTGTGGCTGTGGTGTAGGCCGGCAGCTGTAACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-135, gnl|bosTau2|chr16 (16522893-16523027) | |
| 1-135, gnl|canFam2|chr7 (43292415-43292323) | |
| 1-135, gnl|danRer3|chr22 (42187324-42187413) | |
| 1-135, gnl|dasNov1|scaffold_9657 (3565-3669) | |
| 1-135, gnl|echTel1|scaffold_189255 (7376-7469) | |
| 1-135, gnl|fr1|chrUn (90652307-90652200) | |
| 1-135, gnl|galGal2|chr3 (14016534-14016436) | |
| 1-135, gnl|hg17|chr1 (220286806-220286911) | |
| 1-135, gnl|Hg17|chr1 (220286959-220286825) | |
| 1-135, gnl|loxAfr1|scaffold_23559 (9410-9508) | |
| 1-135, gnl|mm7|chr1 (182438648-182438543) | |
| 1-135, gnl|Mm7|chr1 (182438493-182438627) | |
| 1-135, gnl|monDom2|scaffold_13 (31076814-31076919) | |
| 1-135, gnl|oryCun1|scaffold_211810 (107720-107618) | |
| 1-135, gnl|panTro1|chr1 (204246119-204246224) | |
| 1-135, gnl|rheMac2|chr1 (146541409-146541304) | |
| 1-135, gnl|rn3|chr13 (98646504-98646399) | |
| 1-135, gnl|tetNig1|chr17 (5624111-5624217) | |
| 1-135, gnl|xenTro1|scaffold_550 (532092-531981) | |
| 301-500, gnl|bosTau2|chr16 (13963091-13962892) | |
| 301-500, gnl|canFam2|chr7 (43297204-43296990) | |
| 301-500, gnl|danRer3|chr22 (42183076-42183286) | |
| 301-500, gnl|dasNov1|scaffold_30195 (1541-1739) | |
| 301-500, gnl|echTel1|scaffold_297100 (1146-931) | |
| 301-500, gnl|fr1|chrUn (90652854-90652631) | |
| 301-500, gnl|galGal2|chr3 (14018156-14017942) | |
| 301-500, gnl|hg17|chr1 (220278544-220278759) | |
| 301-500, gnl|Hg17|chr1 (220278752-220278553) | |
| 301-500, gnl|loxAfr1|scaffold_213372 (1018-801) | |
| 301-500, gnl|mm7|chr1 (182443764-182443550) | |
| 301-500, gnl|Mm7|chr1 (182443554-182443753) | |
| 301-500, gnl|monDom2|scaffold_13 (31049055-31049268) | |
| 301-500, gnl|oryCun1|scaffold_211810 (112716-112507) | |
| 301-500, gnl|panTro1|chr1 (204237816-204238031) | |
| 301-500, gnl|rheMac2|chr1 (146549656-146549441) | |
| 301-500, gnl|rn3|chr13 (98651433-98651219) | |
| 301-500, gnl|tetNig1|chr17 (5623573-5623785) | |
| 301-500, gnl|xenTro1|scaffold_550 (534768-534545) | |
| 501-873, gnl|bosTau2|chr16 (13960378-13959982) | |
| 501-873, gnl|Hg17|chr1 (220275332-220274933) | |
| 501-873, gnl|Mm7|chr1 (182446481-182446827) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-135, gnl|bosTau2|chr16 (16522893-16523027) | |
| 1-135, gnl|canFam2|chr7 (43292415-43292323) | |
| 1-135, gnl|danRer3|chr22 (42187324-42187413) | |
| 1-135, gnl|dasNov1|scaffold_9657 (3565-3669) | |
| 1-135, gnl|echTel1|scaffold_189255 (7376-7469) | |
| 1-135, gnl|fr1|chrUn (90652307-90652200) | |
| 1-135, gnl|galGal2|chr3 (14016534-14016436) | |
| 1-135, gnl|hg17|chr1 (220286806-220286911) | |
| 1-135, gnl|Hg17|chr1 (220286959-220286825) | |
| 1-135, gnl|loxAfr1|scaffold_23559 (9410-9508) | |
| 1-135, gnl|mm7|chr1 (182438648-182438543) | |
| 1-135, gnl|Mm7|chr1 (182438493-182438627) | |
| 1-135, gnl|monDom2|scaffold_13 (31076814-31076919) | |
| 1-135, gnl|oryCun1|scaffold_211810 (107720-107618) | |
| 1-135, gnl|panTro1|chr1 (204246119-204246224) | |
| 1-135, gnl|rheMac2|chr1 (146541409-146541304) | |
| 1-135, gnl|rn3|chr13 (98646504-98646399) | |
| 1-135, gnl|tetNig1|chr17 (5624111-5624217) | |
| 1-135, gnl|xenTro1|scaffold_550 (532092-531981) | |
| 301-500, gnl|bosTau2|chr16 (13963091-13962892) | |
| 301-500, gnl|canFam2|chr7 (43297204-43296990) | |
| 301-500, gnl|danRer3|chr22 (42183076-42183286) | |
| 301-500, gnl|dasNov1|scaffold_30195 (1541-1739) | |
| 301-500, gnl|echTel1|scaffold_297100 (1146-931) | |
| 301-500, gnl|fr1|chrUn (90652854-90652631) | |
| 301-500, gnl|galGal2|chr3 (14018156-14017942) | |
| 301-500, gnl|hg17|chr1 (220278544-220278759) | |
| 301-500, gnl|Hg17|chr1 (220278752-220278553) | |
| 301-500, gnl|loxAfr1|scaffold_213372 (1018-801) | |
| 301-500, gnl|mm7|chr1 (182443764-182443550) | |
| 301-500, gnl|Mm7|chr1 (182443554-182443753) | |
| 301-500, gnl|monDom2|scaffold_13 (31049055-31049268) | |
| 301-500, gnl|oryCun1|scaffold_211810 (112716-112507) | |
| 301-500, gnl|panTro1|chr1 (204237816-204238031) | |
| 301-500, gnl|rheMac2|chr1 (146549656-146549441) | |
| 301-500, gnl|rn3|chr13 (98651433-98651219) | |
| 301-500, gnl|tetNig1|chr17 (5623573-5623785) | |
| 301-500, gnl|xenTro1|scaffold_550 (534768-534545) | |
| 501-873, gnl|bosTau2|chr16 (13960378-13959982) | |
| 501-873, gnl|Hg17|chr1 (220275332-220274933) | |
| 501-873, gnl|Mm7|chr1 (182446481-182446827) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.236967) | |
| fty (0.17584) | |
| hyp (0.142837) |