Non-Coding RNA Search

Ss1.1-rpgl14_k14.5

Sequence:


               
               CTGTCCCCCGCGGAGGTGAGGAAGGGGGTGCGTCCTTCTCACAGCCAGTGACCTCCTGGT
CTCGGCGTCGGGCCTCGGCATGTGGCCGGGTTAGCGGGGGCGTGCACATCGGTGTGCTGC
CTGGCAGGACGGGACCAGATCAGGGACCCTCTTGGGAGGCTGGAGATGGCCAGTCTTTTC
TTTGGGATTCTGCCCATTCCTGCCTTGGCGGGAGGGGAGAGGGGGAGCTGGGGTCCCCGG
CCTCGTTGCTCGCTTCTCCGAGGACTGGCAGCTCCTTGTGCAGGAACCTGGACTCGGGCG
CAGCCTGGGGCTTCACCCCGAGCCCCTGTCCACCTCCTTGCCGTGGGAGCACACGGCAAT
CTCACGGTCGGTGCAGACCCTCTGAGCGCTTGGTTTGGAGACGCCAGCAGGCCTGAGGGA
TCTGCAGATTTGCTGAAACGACACCCCATGGCCCCAAGGCAGTGCTCGACTCCCCATCCT
CCGCAGAGTCCTGGGGTCAAGCCCACGCCCAGCAGGTGGGGTAGGGCAAGGGAAGCTAAA
ACCCCTAAAGCCCTCGGGTTTTCAGTTACATGTAAAACTTTAATTTCTAAAACGGGGGGA
GATAATTTTGAACACTGTTCTGTGATCATAACTGCTAGTTTCGAGGACACTGCCAGCTGT
CCTGCGTCCTGTGTGGCCATCCCCCTATGTGCTGTCGCTGTAGCTGCTCTGTTTAGACAA
TGGGTAGACGCTCTGTGGAGGCGGGCCCGTCTATAGCCGCCGCGGTGTCACTTTTCAGAT
GTGTATATTGATGATAGGTCAGAAAGTGTATACACTACAATAAAGTCTGGTTCTAACTCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCCCCGCGGAGGTGAGGAAGGGGGTGCGTCCTTCTCACAGCCAGTGACCTCCTGGT
CTCGGCGTCGGGCCTCGGCATGTGGCCGGGTTAGCGGGGGCGTGCACATCGGTGTGCTGC
CTGGCAGGACGGGACCAGATCAGGGACCCTCTTGGGAGGCTGGAGATGGCCAGTCTTTTC
TTTGGGATTCTGCCCATTCCTGCCTTGGCGGGAGGGGAGAGGGGGAGCTGGGGTCCCCGG
CCTCGTTGCTCGCTTCTCCGAGGACTGGCAGCTCCTTGTGCAGGAACCTGGACTCGGGCG
CAGCCTGGGGCTTCACCCCGAGCCCCTGTCCACCTCCTTGCCGTGGGAGCACACGGCAAT
CTCACGGTCGGTGCAGACCCTCTGAGCGCTTGGTTTGGAGACGCCAGCAGGCCTGAGGGA
TCTGCAGATTTGCTGAAACGACACCCCATGGCCCCAAGGCAGTGCTCGACTCCCCATCCT
CCGCAGAGTCCTGGGGTCAAGCCCACGCCCAGCAGGTGGGGTAGGGCAAGGGAAGCTAAA
ACCCCTAAAGCCCTCGGGTTTTCAGTTACATGTAAAACTTTAATTTCTAAAACGGGGGGA
GATAATTTTGAACACTGTTCTGTGATCATAACTGCTAGTTTCGAGGACACTGCCAGCTGT
CCTGCGTCCTGTGTGGCCATCCCCCTATGTGCTGTCGCTGTAGCTGCTCTGTTTAGACAA
TGGGTAGACGCTCTGTGGAGGCGGGCCCGTCTATAGCCGCCGCGGTGTCACTTTTCAGAT
GTGTATATTGATGATAGGTCAGAAAGTGTATACACTACAATAAAGTCTGGTTCTAACTCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               453-841, gnl|bosTau2|chr16 (30890058-30889646)
               

               
               453-841, gnl|Hg17|chr1 (9723787-9723345)
               

               
               453-841, gnl|Mm7|chr4 (148638053-148638441)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               453-841, gnl|bosTau2|chr16 (30890058-30889646)
               

               
               453-841, gnl|Hg17|chr1 (9723787-9723345)
               

               
               453-841, gnl|Mm7|chr4 (148638053-148638441)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               fcc (2.17563)
               

               
               cmu (1.30475)
               

               
               cbe (0.717703)
               

               
               hyp (0.714184)
               

               
               cki (0.660939)
               

               
               fhi (0.508733)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (2.17563)
               

               
               cmu (1.30475)
               

               
               cbe (0.717703)
               

               
               hyp (0.714184)
               

               
               cki (0.660939)
               

               
               fhi (0.508733)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               fco (0.314416)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	453-841, gnl\|bosTau2\|chr16 (30890058-30889646)
	453-841, gnl\|Hg17\|chr1 (9723787-9723345)
	453-841, gnl\|Mm7\|chr4 (148638053-148638441)

	fcc (2.17563)
	cmu (1.30475)
	cbe (0.717703)
	hyp (0.714184)
	cki (0.660939)
	fhi (0.508733)
	sto (0.359648)
	pgl (0.35545)
	fbs (0.350693)
	eye (0.341006)
	fco (0.314416)
	fce (0.271592)
	ecc (0.23007)
	jej (0.197844)
	col (0.195008)
	gul (0.177588)
	ill (0.175593)
	duo (0.172801)
	cut (0.169924)
	lin (0.145603)
	pty (0.142714)
	cst (0.140036)
	che (0.136314)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	jca (0.11396)
	spc (0.113366)