Non-Coding RNA Search

Ss1.1-rpgl15_c3.5

Sequence:


               
               GCGAGGTTATTTGGTCATTTTCCTTTCTTCTAAAAAAAAAAAAAAAAAATGTTGGCGGGG
TTAAAGGGGAGGGTAGGAGAGAAGGGATTTATCTGTTTGGTTGTGACGGAGACGGAACGC
CTTCCCTCCCGTTGTGTGTAGTGCAGCCGGGCAGCTGCAGCCTGCCCTGCTGGTGACCTT
GACCCTGACCTCGTGCGACTACCCTCTCTGTCTGAGAGGAAATTCAGGCTCCATTTTAGC
TCGTGTGTTTGGTGGGCCTTTCCAGTGTGCTGGGGCCTGGTGATTAAGTTATATTTTGAG
AATGGGCTCTCCTACCCTGTTCTCTAATTGAATACTGTTATCCCACTCAGTTTAAAAAAA
AAAAAATCAACTCTTTATTTTAGTCACATAAAGCCACTTTTTTCACTGAAGTAAGAAGCA
ATTACCTTTTGGGAACACCGTAAAAGTCCCTCCAGTTTTAAAAGAGAAGCCTAATTTGCA
ATGCTTTTCCACTTACCTTTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGTTATTTGGTCATTTTCCTTTCTTCTAAAAAAAAAAAAAAAAAATGTTGGCGGGG
TTAAAGGGGAGGGTAGGAGAGAAGGGATTTATCTGTTTGGTTGTGACGGAGACGGAACGC
CTTCCCTCCCGTTGTGTGTAGTGCAGCCGGGCAGCTGCAGCCTGCCCTGCTGGTGACCTT
GACCCTGACCTCGTGCGACTACCCTCTCTGTCTGAGAGGAAATTCAGGCTCCATTTTAGC
TCGTGTGTTTGGTGGGCCTTTCCAGTGTGCTGGGGCCTGGTGATTAAGTTATATTTTGAG
AATGGGCTCTCCTACCCTGTTCTCTAATTGAATACTGTTATCCCACTCAGTTTAAAAAAA
AAAAAATCAACTCTTTATTTTAGTCACATAAAGCCACTTTTTTCACTGAAGTAAGAAGCA
ATTACCTTTTGGGAACACCGTAAAAGTCCCTCCAGTTTTAAAAGAGAAGCCTAATTTGCA
ATGCTTTTCCACTTACCTTTGCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               36-147, - strand, RNAz p=0.941491

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-147, - strand, RNAz p=0.941491

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-504, gnl|bosTau2|chr17 (7722571-7723088)
               

               
               3-504, gnl|Hg17|chr4 (147214790-147214285)
               

               
               3-504, gnl|Mm7|chr8 (77571162-77571696)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-504, gnl|bosTau2|chr17 (7722571-7723088)
               

               
               3-504, gnl|Hg17|chr4 (147214790-147214285)
               

               
               3-504, gnl|Mm7|chr8 (77571162-77571696)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               eje (0.0988338)

	3-504, gnl\|bosTau2\|chr17 (7722571-7723088)
	3-504, gnl\|Hg17\|chr4 (147214790-147214285)
	3-504, gnl\|Mm7\|chr8 (77571162-77571696)