Non-Coding RNA Search

Ss1.1-rpgl15_j9.5

Sequence:


               
               TTCTGATGGCTCCTGCCCTTGTTTTCCATTTATATACTTAGGATACATACCTTTCTGAAC
AGAGGGACATATACTGACCATAACTTAGACACGGTTCCAGCCTCCGTGTCCACAGGCATG
AGGATGAGCACGCAAGTGCAGACATGTAAGGCAAACTCTCGGAGTACCTGTCATCAGAGT
TTATAGTTCACTGCACCCAGGACTCCCTTCCCTTATGGGTGAGGTCCCTGATGTTGTCTC
TGCCTTTGTTTGGGGAACTCGCCACAGGTTTGGAATAAGCCGCAGGTCCCCAGCCTCCAT
CGACAGGCAGAACACCCAGTCAGATATCGGCGGCAGTGGGAAATCCACACCCAGCTGGCA
AAGAAGTGAGGATAGCATTGCCGACCAGATGGGTAAGTAACTCATTTCTACAAAAAGCAA
GTTGCTTTTATACCAAGGTGACTTTGGCTACCTCTGGATGATGTCTCCAGAGCATCCTGT
TCTGTAATATAGCCCTGGGTCATACGTGGGAATGAGCATTAAGTCTCAGTGAGCTTATGT
GTCAGTGAAAGCAGCAGTTAAGATCTGAGAGGAGTTGAAAGATTCTAAGTGACCCCAACT
TTAAAAACAGAAGGAACATGGAGATTATTTTCAGCACTAAAGTTAAAATGCCAGAGTACC
AAGCTGCATGTGTCTGAAGTATCTCCTTCCTGCCCCGTTTGTTTTTGCCTAATATAAGTG
TCCTGGGAGATTAGTGGGTATTCTTAATGTTGAGTTTTACAAAAGTAAAAACTATGCACA
AAATGGGAAAGAGATATAGTTGCTGTTTAGTCACATCTATAGCTTGGTTAGGATCTTTTT
CCTCCCTTTATGTGCTTTTCCCCCCTATTCTGCTATTAAGCTGTCAGCTAAGGAAATGTC
TTAGTATGAAACAGCTGGAAGGGAAAGATTTGCATGAGCAAGCCTTCATTTGGCTTTCTG
GCATTTAGTCCTTTCTTTCTCTTTCTCTCTGTGCAATTGTACAGTGGCACCAAAACAATA
GTTGATACAGTAAAAATTTGCCACAAAACAAGATTAAGTTTCAACCTGGTAGCACCAAGG
ATACATAGTAGCTACACGGTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGATGGCTCCTGCCCTTGTTTTCCATTTATATACTTAGGATACATACCTTTCTGAAC
AGAGGGACATATACTGACCATAACTTAGACACGGTTCCAGCCTCCGTGTCCACAGGCATG
AGGATGAGCACGCAAGTGCAGACATGTAAGGCAAACTCTCGGAGTACCTGTCATCAGAGT
TTATAGTTCACTGCACCCAGGACTCCCTTCCCTTATGGGTGAGGTCCCTGATGTTGTCTC
TGCCTTTGTTTGGGGAACTCGCCACAGGTTTGGAATAAGCCGCAGGTCCCCAGCCTCCAT
CGACAGGCAGAACACCCAGTCAGATATCGGCGGCAGTGGGAAATCCACACCCAGCTGGCA
AAGAAGTGAGGATAGCATTGCCGACCAGATGGGTAAGTAACTCATTTCTACAAAAAGCAA
GTTGCTTTTATACCAAGGTGACTTTGGCTACCTCTGGATGATGTCTCCAGAGCATCCTGT
TCTGTAATATAGCCCTGGGTCATACGTGGGAATGAGCATTAAGTCTCAGTGAGCTTATGT
GTCAGTGAAAGCAGCAGTTAAGATCTGAGAGGAGTTGAAAGATTCTAAGTGACCCCAACT
TTAAAAACAGAAGGAACATGGAGATTATTTTCAGCACTAAAGTTAAAATGCCAGAGTACC
AAGCTGCATGTGTCTGAAGTATCTCCTTCCTGCCCCGTTTGTTTTTGCCTAATATAAGTG
TCCTGGGAGATTAGTGGGTATTCTTAATGTTGAGTTTTACAAAAGTAAAAACTATGCACA
AAATGGGAAAGAGATATAGTTGCTGTTTAGTCACATCTATAGCTTGGTTAGGATCTTTTT
CCTCCCTTTATGTGCTTTTCCCCCCTATTCTGCTATTAAGCTGTCAGCTAAGGAAATGTC
TTAGTATGAAACAGCTGGAAGGGAAAGATTTGCATGAGCAAGCCTTCATTTGGCTTTCTG
GCATTTAGTCCTTTCTTTCTCTTTCTCTCTGTGCAATTGTACAGTGGCACCAAAACAATA
GTTGATACAGTAAAAATTTGCCACAAAACAAGATTAAGTTTCAACCTGGTAGCACCAAGG
ATACATAGTAGCTACACGGTTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-517, + strand, RNAz p=0.986385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-517, + strand, RNAz p=0.986385

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-1103, gnl|bosTau2|chr10 (58538589-58539682)
               

               
               3-1103, gnl|Hg17|chr14 (71238592-71239667)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1103, gnl|bosTau2|chr10 (58538589-58539682)
               

               
               3-1103, gnl|Hg17|chr14 (71238592-71239667)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               pgl (0.118483)

	3-1103, gnl\|bosTau2\|chr10 (58538589-58539682)
	3-1103, gnl\|Hg17\|chr14 (71238592-71239667)