Non-Coding RNA Search

Ss1.1-rpgl16_e9.5

Sequence:


               
               GAAATATACAAATTTAAGCCCTCAACTTGTGTGATGTGACACACGTACAGATACTTTTCA
TGTACGTAACACCAAGAAAATCTGGATTAAAGTGCCTTAAAATATACGGAATTTTTTAAA
AATTGTTATTCTGTTTGCAGATTATTTTTGTTTTTTGAAGGGTTTTTATTTTTATTTCTT
ATTCACGAAATATTTGAGAACCTACAATGTGCAAAGTTCTGTAGTATTGCTGTAGAGAAT
CATAACTCATAGAAATAAAGTACATAGGGGAAGAGGTATGTAAATGACGTGAAGAATTTT
CCAATTTGAACTCGTTTTGCTTCTTTAAAATTTTTATATCTACTAAAGTTAAGAAAACGA
AAGCATTGCCTATTGCTTCTGAATTGAGACACTTTGAGAGGTCAGTTTTTCTTTTTCGAC
TGACTTTCGGAAGAGAGTTCTTGTCCTCCTCCCTCCCCCCAGGAATTTATCTTGCTCCTT
CTTAAAAGCATAAATTTAAATACTTAGCATGTATAATGGTCTCATACTGTTAAGTTCCTT
TTTGGAAATGTTCGATGCTGTTTTATTTTCAAGTTGGAACAATGAAGGCCTTTTTCTTGA
TGATACCCTAAACCCGAGAGATAGGAATTGGTCCTTTTCACCTGCTTCTTAAGCCCTTCC
ACGCATGCTGATGGTACTTTGGATCCCTGTCCTTTCTGTCCCAAAGATTTTGCTTCCCGT
TGCTTTTTCCAAGGAGCTGGCTCTGGAAATAATGTTTGGTGGTTTCTTGCTAATCTGATG
ACATGAGCCACCAGAGCACTGGGTTTTAAATAAAATATTAGTAGACTGTTTTAACAAGCA
AGTTTGGGGATTGCTCTTTCCTCTCAAAAGACCTCGTTAAGGGTTGGACCCTTGCTGCAT
CTGTGTAGCACAAAGGTTGTTTCTTATGGGAGGAGAGACTGGATGACTTGTATTGATGCT
CTTGCTATTTCCCACAGGCTCCTACCCAGAGATTCTACCCAGTGAAACTCCCACAGCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATATACAAATTTAAGCCCTCAACTTGTGTGATGTGACACACGTACAGATACTTTTCA
TGTACGTAACACCAAGAAAATCTGGATTAAAGTGCCTTAAAATATACGGAATTTTTTAAA
AATTGTTATTCTGTTTGCAGATTATTTTTGTTTTTTGAAGGGTTTTTATTTTTATTTCTT
ATTCACGAAATATTTGAGAACCTACAATGTGCAAAGTTCTGTAGTATTGCTGTAGAGAAT
CATAACTCATAGAAATAAAGTACATAGGGGAAGAGGTATGTAAATGACGTGAAGAATTTT
CCAATTTGAACTCGTTTTGCTTCTTTAAAATTTTTATATCTACTAAAGTTAAGAAAACGA
AAGCATTGCCTATTGCTTCTGAATTGAGACACTTTGAGAGGTCAGTTTTTCTTTTTCGAC
TGACTTTCGGAAGAGAGTTCTTGTCCTCCTCCCTCCCCCCAGGAATTTATCTTGCTCCTT
CTTAAAAGCATAAATTTAAATACTTAGCATGTATAATGGTCTCATACTGTTAAGTTCCTT
TTTGGAAATGTTCGATGCTGTTTTATTTTCAAGTTGGAACAATGAAGGCCTTTTTCTTGA
TGATACCCTAAACCCGAGAGATAGGAATTGGTCCTTTTCACCTGCTTCTTAAGCCCTTCC
ACGCATGCTGATGGTACTTTGGATCCCTGTCCTTTCTGTCCCAAAGATTTTGCTTCCCGT
TGCTTTTTCCAAGGAGCTGGCTCTGGAAATAATGTTTGGTGGTTTCTTGCTAATCTGATG
ACATGAGCCACCAGAGCACTGGGTTTTAAATAAAATATTAGTAGACTGTTTTAACAAGCA
AGTTTGGGGATTGCTCTTTCCTCTCAAAAGACCTCGTTAAGGGTTGGACCCTTGCTGCAT
CTGTGTAGCACAAAGGTTGTTTCTTATGGGAGGAGAGACTGGATGACTTGTATTGATGCT
CTTGCTATTTCCCACAGGCTCCTACCCAGAGATTCTACCCAGTGAAACTCCCACAGCAAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               825-943, - strand, RNAz p=0.948374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               825-943, - strand, RNAz p=0.948374

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               35-1017, gnl|bosTau2|chr21 (30273541-30272557)
               

               
               35-1017, gnl|Hg17|chr14 (35079722-35078608)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-1017, gnl|bosTau2|chr21 (30273541-30272557)
               

               
               35-1017, gnl|Hg17|chr14 (35079722-35078608)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               pgl (0.118483)

	35-1017, gnl\|bosTau2\|chr21 (30273541-30272557)
	35-1017, gnl\|Hg17\|chr14 (35079722-35078608)