Non-Coding RNA Search

Ss1.1-rpgl16_j16.5

Sequence:


               
               CAAATGGTCCAGTAGGCGTTTGATCCCTTTGAGTGAAGTCAGTTCTCAAATGTAAAGGAG
GAAATGATGAACATGGACTGAGGCAACAAGCTAGTATAGTAGCATCTAAGAAAGAAGCCA
AGCGATGCAAAGAGAGGAGAGACGTGGGTGCCATTTGGGATTCCAGTGGATACTGCAACC
AATGTGTGACATCCATGAAAGAAACTAGGAGCAAAAATGCAACATTCATTCTCTCAACGA
AGAAGTTTTACTTAGGCAAGCATTTCTGAAACTATTTCTAGATCAGTTGTTTTATAGGAC
TTTCAAAACCTTAGAAATAACTGATGAGGACTATGGATATGTCTGTTTTCTGCCTAATAA
TTGTTGTGAGATTTGATTTGATCAATCTGGGCATTTTTTATTCATCAGCTTCCCCTGAAA
CACCAGAAAATAGGAGAAGAAAGAATAGCTGTGTGGAGACTTAGGGTATTTTCTTATGTG
CTTGATAGTGTTAGGTAGTGATTAAAACTCTAGAAAGAAGTTAACAGCTGGTTAGAAAAG
TTTTAACCTGTGAAACAAGCATTTTTTTTTAATCTAGTTTAAAATTTTTATAAATGCTAA
GAATAAGAAAATGCGGCCTACATATTAAAATTGTTTCTTACAAATACATGTCTAAAATAA
AGATTATATAAAGCACCAAGTTATTAGATTTGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATGGTCCAGTAGGCGTTTGATCCCTTTGAGTGAAGTCAGTTCTCAAATGTAAAGGAG
GAAATGATGAACATGGACTGAGGCAACAAGCTAGTATAGTAGCATCTAAGAAAGAAGCCA
AGCGATGCAAAGAGAGGAGAGACGTGGGTGCCATTTGGGATTCCAGTGGATACTGCAACC
AATGTGTGACATCCATGAAAGAAACTAGGAGCAAAAATGCAACATTCATTCTCTCAACGA
AGAAGTTTTACTTAGGCAAGCATTTCTGAAACTATTTCTAGATCAGTTGTTTTATAGGAC
TTTCAAAACCTTAGAAATAACTGATGAGGACTATGGATATGTCTGTTTTCTGCCTAATAA
TTGTTGTGAGATTTGATTTGATCAATCTGGGCATTTTTTATTCATCAGCTTCCCCTGAAA
CACCAGAAAATAGGAGAAGAAAGAATAGCTGTGTGGAGACTTAGGGTATTTTCTTATGTG
CTTGATAGTGTTAGGTAGTGATTAAAACTCTAGAAAGAAGTTAACAGCTGGTTAGAAAAG
TTTTAACCTGTGAAACAAGCATTTTTTTTTAATCTAGTTTAAAATTTTTATAAATGCTAA
GAATAAGAAAATGCGGCCTACATATTAAAATTGTTTCTTACAAATACATGTCTAAAATAA
AGATTATATAAAGCACCAAGTTATTAGATTTGGCAT

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-696, gnl|bosTau2|chr2 (54257058-54256379)
               

               
               1-696, gnl|Hg17|chr2 (210422359-210423035)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr2 (54257058-54256379)
               

               
               1-696, gnl|Hg17|chr2 (210422359-210423035)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	1-696, gnl\|bosTau2\|chr2 (54257058-54256379)
	1-696, gnl\|Hg17\|chr2 (210422359-210423035)

	ece (0.229305)
	fbs (0.175346)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)