Non-Coding RNA Search

Ss1.1-rpgl16_l22.5

Sequence:


               
               TCTGCCCCTCTTTGCTGCCTTGGGGTTAGCAGAACACAGAAAGGATCCGAGGAGCGAGAG
GAATGTCCTTTCCTTAAACTGCCTTAATAACTAGCCTTTAACCTCTGGGAGCGGGTTTGA
ACAGGAGCCTAGTGTGGGGGTTGATCACTTTCACAGCGAAGAGAAGGCCCTTGCGTTTTC
CTAAGTGGTGGTGCACAGGGAAGAAACACGTCTCAGACGGCCTGCAGGCCCCACCTGCGT
GGCCTCATGCAGAGAGGAATCTTGGGGGCATAGTGTTGAAACCATTCTGGCCCAATTAGC
CTCCAGTGACTGATGAGGAAGGCCAGTGAGGCCCAGAGAAGCCCAATGACTTGCTTAGGC
AATCAAGGCCTAGTCAGTGTCAGGGCAAGCCTCCGATCCCAGTCTCCTGGCCCTCTGGCT
GTGTCTGTCCACTAACCAATGTCTTCCTCTACTGGGGTTACTCTGTCTTTTCGCTCAGAA
AACTTGGTTCAAGATGTTCCTTCCTTGGCTGTTCCCATCTAATCCATTCTGTGTGCTTTT
ACTCAGAGCCATGTCCCTTGAATTCTGAAATTGGAAATGGAGCTAGCTTCTCCCCCTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCCCCTCTTTGCTGCCTTGGGGTTAGCAGAACACAGAAAGGATCCGAGGAGCGAGAG
GAATGTCCTTTCCTTAAACTGCCTTAATAACTAGCCTTTAACCTCTGGGAGCGGGTTTGA
ACAGGAGCCTAGTGTGGGGGTTGATCACTTTCACAGCGAAGAGAAGGCCCTTGCGTTTTC
CTAAGTGGTGGTGCACAGGGAAGAAACACGTCTCAGACGGCCTGCAGGCCCCACCTGCGT
GGCCTCATGCAGAGAGGAATCTTGGGGGCATAGTGTTGAAACCATTCTGGCCCAATTAGC
CTCCAGTGACTGATGAGGAAGGCCAGTGAGGCCCAGAGAAGCCCAATGACTTGCTTAGGC
AATCAAGGCCTAGTCAGTGTCAGGGCAAGCCTCCGATCCCAGTCTCCTGGCCCTCTGGCT
GTGTCTGTCCACTAACCAATGTCTTCCTCTACTGGGGTTACTCTGTCTTTTCGCTCAGAA
AACTTGGTTCAAGATGTTCCTTCCTTGGCTGTTCCCATCTAATCCATTCTGTGTGCTTTT
ACTCAGAGCCATGTCCCTTGAATTCTGAAATTGGAAATGGAGCTAGCTTCTCCCCCTACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               302-421, - strand, RNAz p=0.867739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               302-421, - strand, RNAz p=0.867739

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-596, gnl|bosTau2|chr24 (39717740-39718346)
               

               
               5-596, gnl|Hg17|chr18 (46510306-46510867)
               

               
               5-596, gnl|Mm7|chr18 (74324647-74324107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-596, gnl|bosTau2|chr24 (39717740-39718346)
               

               
               5-596, gnl|Hg17|chr18 (46510306-46510867)
               

               
               5-596, gnl|Mm7|chr18 (74324647-74324107)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               pgl (0.118483)

	5-596, gnl\|bosTau2\|chr24 (39717740-39718346)
	5-596, gnl\|Hg17\|chr18 (46510306-46510867)
	5-596, gnl\|Mm7\|chr18 (74324647-74324107)