Non-Coding RNA Search

Ss1.1-rpgl18_g24.5

Sequence:


               
               GTTTCTGGGTTTAGGGGGCCATTTGTGTGGACCAATCTACTCGGGGAATTCCAGGCCCAC
CAGGACACGTGCCAATGGCCCCATCCAGATGGCAAGGGAGGAGGTGTTCTCCAAGAAGGG
CAGAGGCTTCCACTGTTAATAAATACCGTTTCATTCCTCTCTCTCCTGTTACCTTCTGCC
AAGACATCGTTGGCTTCTGACATCTTATTCTTTGATGTCTCAAGGCTCTATTTCCAAGAC
ATTGGTACCAGGTGACCCCCCCTAGCTACCTGTACCATGGTTCTTGACCAGCAGACTCAA
CCCTCCATCCTACCCTACTGCCATGGCCTTCCTCACATCTCTTTAAATTCCATCTTTGCA
GTACTCAAGAAAAGGTTCTTGGAATTTGCTAATGATGTGATAAACCATGTAACTTGAGCT
AGTGAGGCCTCCAGCTGAGTTTTTCTGCTTTTTTTGCCTCACACAGATTCTAAGGTATTC
CTGCTGCCTTGGAAGACATAAGAAGCAGTGATACTCCCTAGCTCCCTTTCATCTTCCTTA
CAAATTCACAGATGGTACATGGTAGAAACAAAGTTACCACTGTTTCTTTTCTGATATATG
AGGAAGAATGGTTGTGCCTCATATACTGCTTCTAGTGAAATCTAGAAGGAGGCTCAAAGG
AGTCAACATTTAGACCTGGAAGGGGCAAGTCATGCCTTGGGCCTAGAATACCCTGATAAG
AGAAGAGGAAGGGAGGCCACATCTACAACACAGCCTCTCGTTACTGCTGCTCCTTATTTT
TACTTGTCTTGCATTGTCCTGTATTTATCACAGTTTCTGTTCAACAGCTTTTTAAGTATT
TGGGGAGTTTATCTTGCCATCCTCTCCCTCCTGGTTCTCTGCACCCAACTGTCCCACTGC
AGTTCCTTCTGTGTTCTGTGACTTTAAGAGAAGAGGGGGGGAGGGGTCTCGGATTTTGTT
TGTTTGTTTGTTTTTTTCTCCTTAGCAGTAGGACTTGATATTTTCAATTTTGGAAGAACT
AAAAGATAAATAAACCGTGGTTTTTTTTGTTGTTGTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCTGGGTTTAGGGGGCCATTTGTGTGGACCAATCTACTCGGGGAATTCCAGGCCCAC
CAGGACACGTGCCAATGGCCCCATCCAGATGGCAAGGGAGGAGGTGTTCTCCAAGAAGGG
CAGAGGCTTCCACTGTTAATAAATACCGTTTCATTCCTCTCTCTCCTGTTACCTTCTGCC
AAGACATCGTTGGCTTCTGACATCTTATTCTTTGATGTCTCAAGGCTCTATTTCCAAGAC
ATTGGTACCAGGTGACCCCCCCTAGCTACCTGTACCATGGTTCTTGACCAGCAGACTCAA
CCCTCCATCCTACCCTACTGCCATGGCCTTCCTCACATCTCTTTAAATTCCATCTTTGCA
GTACTCAAGAAAAGGTTCTTGGAATTTGCTAATGATGTGATAAACCATGTAACTTGAGCT
AGTGAGGCCTCCAGCTGAGTTTTTCTGCTTTTTTTGCCTCACACAGATTCTAAGGTATTC
CTGCTGCCTTGGAAGACATAAGAAGCAGTGATACTCCCTAGCTCCCTTTCATCTTCCTTA
CAAATTCACAGATGGTACATGGTAGAAACAAAGTTACCACTGTTTCTTTTCTGATATATG
AGGAAGAATGGTTGTGCCTCATATACTGCTTCTAGTGAAATCTAGAAGGAGGCTCAAAGG
AGTCAACATTTAGACCTGGAAGGGGCAAGTCATGCCTTGGGCCTAGAATACCCTGATAAG
AGAAGAGGAAGGGAGGCCACATCTACAACACAGCCTCTCGTTACTGCTGCTCCTTATTTT
TACTTGTCTTGCATTGTCCTGTATTTATCACAGTTTCTGTTCAACAGCTTTTTAAGTATT
TGGGGAGTTTATCTTGCCATCCTCTCCCTCCTGGTTCTCTGCACCCAACTGTCCCACTGC
AGTTCCTTCTGTGTTCTGTGACTTTAAGAGAAGAGGGGGGGAGGGGTCTCGGATTTTGTT
TGTTTGTTTGTTTTTTTCTCCTTAGCAGTAGGACTTGATATTTTCAATTTTGGAAGAACT
AAAAGATAAATAAACCGTGGTTTTTTTTGTTGTTGTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               181-280, - strand, RNAz p=0.902083
               

               
               428-527, + strand, RNAz p=0.877019

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-280, - strand, RNAz p=0.902083
               

               
               428-527, + strand, RNAz p=0.877019

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007192, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007192, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr10 (15885049-15883985)
               

               
               1-1056, gnl|Hg17|chr14 (20890560-20889489)
               

               
               1-1056, gnl|Mm7|chr14 (47495252-47494111)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr10 (15885049-15883985)
               

               
               1-1056, gnl|Hg17|chr14 (20890560-20889489)
               

               
               1-1056, gnl|Mm7|chr14 (47495252-47494111)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nms (0.213858)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               nms (0.213858)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)

	181-280, - strand, RNAz p=0.902083
	428-527, + strand, RNAz p=0.877019

	1-1056, gnl\|bosTau2\|chr10 (15885049-15883985)
	1-1056, gnl\|Hg17\|chr14 (20890560-20889489)
	1-1056, gnl\|Mm7\|chr14 (47495252-47494111)

	spl (0.286369)
	hyp (0.285673)
	nms (0.213858)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	ste (0.135208)
	pla (0.133672)
	pgl (0.118483)
	med (0.116252)
	cbl (0.114797)
	cty (0.10408)