Non-Coding RNA Search

Ss1.1-rpgl18_o22.5

Sequence:


               
               CGGCCACCACCACTCCCGCAGCAGGGGCGGCTCCGAGCAGGAGTGGGGCCAGTACCACCA
CGCCGAGAGCGAGCACGCCTGGGCCCGGGAGAAGTACTACCCCGACCGGACGCGCTGGGC
CAAGTGCCGGCACCACCACGACAGGTACGCCCCGTACCCGGCGCGGGAGCTGCGCGACTG
GAAGCCTTTCCACGCCGACCGCGAGTACGAGCGCGCGGGGCCCTACGGCAGCCGGCCCTA
CAAGGACCACTACCGGAGCAGGAAGGGCTACGAGCTGGCCGCCAAGGACAAGGAGCGGCA
CCGCTTCCCCGGGCCCCGGGCGGGCCCCTCCCACGCCCTGCCCCCGCCCCCGCCCCCCCA
CCCGCACCCACACCCGCACCCAGAGAGGTTCGGCCCCGAGAAGGCCGCCCTTGGAGCCGA
GGACAGTGGCTGTCACCTCGCCGGTCGGTTCCATGAACATGAAAATGTCAAGTCACGGAA
ACGGAGATACGAGAGCCTGGAAAACGCTGACGGGCACGTGGAAAAGAAGGCCTGGAGAAG
CTTCCAGAAGGGCCCTTTGGAAGAACCTAAAGTGAAGAAGCACAAGAAGTCAAAGAAGAA
AAAGAAATCCAAAGACAAACACCGAGACCGGGATTCCAGGCACCAGCCGGATTCCGACCT
CTCGGGAGCACATTCTGAGGCCGACCTCCACAGACACAAGAAGAAGAAGAAGAAGAAGAA
GAGACACTCACGGAAATCGGCGGACTTTGTCAGAGCTGCGGACGCGCCCCTGCCCAAGGC
CGCCAGCTGCCAGACTGTGGACCGGTTCCGGAGGGCGGCCGGCGCCTTTCCGCTCCCGGA
CGGCCTGCCTCTGGAAGGGGCTGGACCTTTCCGCGAGAAAACAAAACATTTACGGATGGA
AAGCAGGGCTGACAGGTGTCATCTGTCTGAGTGTGGCCAGTGTGATTGAAAACTTGGCCT
CAGAGCAAAGAATTCACTAGTTACGATTCAACGTGTTCAACAGAAGCCATCCCCAACCCA
GCTTAAATTATAAATAGAGAAAATAACTTTGTTCAAATCTGCGTGGTGCTTCTTTAGTAA
ATACTGTACAGATTTTACCATGGAGGACTTTTTTTTTTAGTTTTTACCTTTTCTTAATTA
CCCTTATTCCAAATGGACGAACACTTTCTACAACTGCTGACCACTGTAAAATACTGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCACCACCACTCCCGCAGCAGGGGCGGCTCCGAGCAGGAGTGGGGCCAGTACCACCA
CGCCGAGAGCGAGCACGCCTGGGCCCGGGAGAAGTACTACCCCGACCGGACGCGCTGGGC
CAAGTGCCGGCACCACCACGACAGGTACGCCCCGTACCCGGCGCGGGAGCTGCGCGACTG
GAAGCCTTTCCACGCCGACCGCGAGTACGAGCGCGCGGGGCCCTACGGCAGCCGGCCCTA
CAAGGACCACTACCGGAGCAGGAAGGGCTACGAGCTGGCCGCCAAGGACAAGGAGCGGCA
CCGCTTCCCCGGGCCCCGGGCGGGCCCCTCCCACGCCCTGCCCCCGCCCCCGCCCCCCCA
CCCGCACCCACACCCGCACCCAGAGAGGTTCGGCCCCGAGAAGGCCGCCCTTGGAGCCGA
GGACAGTGGCTGTCACCTCGCCGGTCGGTTCCATGAACATGAAAATGTCAAGTCACGGAA
ACGGAGATACGAGAGCCTGGAAAACGCTGACGGGCACGTGGAAAAGAAGGCCTGGAGAAG
CTTCCAGAAGGGCCCTTTGGAAGAACCTAAAGTGAAGAAGCACAAGAAGTCAAAGAAGAA
AAAGAAATCCAAAGACAAACACCGAGACCGGGATTCCAGGCACCAGCCGGATTCCGACCT
CTCGGGAGCACATTCTGAGGCCGACCTCCACAGACACAAGAAGAAGAAGAAGAAGAAGAA
GAGACACTCACGGAAATCGGCGGACTTTGTCAGAGCTGCGGACGCGCCCCTGCCCAAGGC
CGCCAGCTGCCAGACTGTGGACCGGTTCCGGAGGGCGGCCGGCGCCTTTCCGCTCCCGGA
CGGCCTGCCTCTGGAAGGGGCTGGACCTTTCCGCGAGAAAACAAAACATTTACGGATGGA
AAGCAGGGCTGACAGGTGTCATCTGTCTGAGTGTGGCCAGTGTGATTGAAAACTTGGCCT
CAGAGCAAAGAATTCACTAGTTACGATTCAACGTGTTCAACAGAAGCCATCCCCAACCCA
GCTTAAATTATAAATAGAGAAAATAACTTTGTTCAAATCTGCGTGGTGCTTCTTTAGTAA
ATACTGTACAGATTTTACCATGGAGGACTTTTTTTTTTAGTTTTTACCTTTTCTTAATTA
CCCTTATTCCAAATGGACGAACACTTTCTACAACTGCTGACCACTGTAAAATACTGTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-371, gnl|bosTau2|chr25 (36660054-36660422)
               

               
               2-371, gnl|Hg17|chr7 (5967477-5967827)
               

               
               2-371, gnl|Mm7|chr5 (142747479-142747123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-371, gnl|bosTau2|chr25 (36660054-36660422)
               

               
               2-371, gnl|Hg17|chr7 (5967477-5967827)
               

               
               2-371, gnl|Mm7|chr5 (142747479-142747123)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tes (0.207814)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	2-371, gnl\|bosTau2\|chr25 (36660054-36660422)
	2-371, gnl\|Hg17\|chr7 (5967477-5967827)
	2-371, gnl\|Mm7\|chr5 (142747479-142747123)