Non-Coding RNA Search

Ss1.1-rpgl18_p5.5

Sequence:


               
               GCTCATTCAGTCAGTGTTTCAGTGCCAGTTATCCCCCAACGAGGCGGGGTTACCCAGAAA
CCAAAGCCCCCTTGGAAATGAGTTTGTCCTTTTTGCAGGTTAGCCCATAGGGTCACAACG
AGGAGCACAGTTTGAGAGGATGGTGCTGGGGGGAGAGCCTCTGGGGAGACCGCCAGGCAT
CGGCCAAGCACATGTGCGGGCAAACGTAGCGAGGATGGGCAGAGCCTCCCTTTCGTCTGA
CAATCTCTGGTCATTCTTTGCTTTTCTTGCTGGTGTGGATTTGAGGGCCACCCACATCTC
TAGTCCTATCACAGCTACACTGCAGATAGTGCCAACCCGGGGAGGGTCCCTCCACCTCCC
CCAATACAGCCACAACATTCTGTCGTCACCAAGTGAATAAATGGTATGATTGCCAACCCG
GAGGGTTCCTTCTCCCCTCATTTCAAGCCAAACTCCTGCCCAGGATGAATTTCCAGCTGA
GTCTGGAGGACTCAGCAATTTTCCCAGGCACCATGTGGACCAGCGAGGAACACAAGGATC
TGGGTGATGTGTGAGTGGACATTTTAAAATTTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCATTCAGTCAGTGTTTCAGTGCCAGTTATCCCCCAACGAGGCGGGGTTACCCAGAAA
CCAAAGCCCCCTTGGAAATGAGTTTGTCCTTTTTGCAGGTTAGCCCATAGGGTCACAACG
AGGAGCACAGTTTGAGAGGATGGTGCTGGGGGGAGAGCCTCTGGGGAGACCGCCAGGCAT
CGGCCAAGCACATGTGCGGGCAAACGTAGCGAGGATGGGCAGAGCCTCCCTTTCGTCTGA
CAATCTCTGGTCATTCTTTGCTTTTCTTGCTGGTGTGGATTTGAGGGCCACCCACATCTC
TAGTCCTATCACAGCTACACTGCAGATAGTGCCAACCCGGGGAGGGTCCCTCCACCTCCC
CCAATACAGCCACAACATTCTGTCGTCACCAAGTGAATAAATGGTATGATTGCCAACCCG
GAGGGTTCCTTCTCCCCTCATTTCAAGCCAAACTCCTGCCCAGGATGAATTTCCAGCTGA
GTCTGGAGGACTCAGCAATTTTCCCAGGCACCATGTGGACCAGCGAGGAACACAAGGATC
TGGGTGATGTGTGAGTGGACATTTTAAAATTTTAAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               339-443, - strand, RNAz p=0.980315
               

               
               461-575, + strand, RNAz p=0.690702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-443, - strand, RNAz p=0.980315
               

               
               461-575, + strand, RNAz p=0.690702

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032848, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032848, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-575, gnl|bosTau2|chr17 (37830228-37829628)
               

               
               1-575, gnl|Hg17|chr12 (112092262-112092841)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-575, gnl|bosTau2|chr17 (37830228-37829628)
               

               
               1-575, gnl|Hg17|chr12 (112092262-112092841)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	339-443, - strand, RNAz p=0.980315
	461-575, + strand, RNAz p=0.690702

	1-575, gnl\|bosTau2\|chr17 (37830228-37829628)
	1-575, gnl\|Hg17\|chr12 (112092262-112092841)

	fty (0.17584)
	mcp (0.170648)
	pgl (0.118483)
	med (0.116252)
	eje (0.0988338)