Non-Coding RNA Search

Ss1.1-rpgl19_j24.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTGGTTTTTTTTTGAAAGATGCGCATTCTAACCTAGAGGTCAAC
GTTATGTATTTATTTATTTATTTATTTGGTTCCCTTCCTGCTCCAAGCTTCCACAGCTGC
CGCCATAGTTTTCTTTTCTCCTTTCCTCCTCTGACTTTGGGGACATTTGGGAGAGGGCTG
CAACGCTTGCTGTTTGTTGGTAGGGTGATGGGACTCGGGCGGGACAGCTGCTGCAGCTCC
CTGACTGCTGCAGGGCCCCCCCTCGCCTGCTTCCCCAAGTGGGTCTGGGTTCCGTGGGTG
ATGGGGCCGGGGCGTTGCTGACGTGTACATAGGATAGTCTATATGAAAAGCAGTTCTGGA
TGGTGTGCCTTCCGGATCCTCTCTGGGGCTGTGTTTTGAGCAGCATGTAGCCTGCTGGTT
TTATCTGAGTGAAATACTGTACAGGGGAATTAAAGAGATCTTATTTTTTTTTTTTTTATA
CTTGGCATTTTTTGAATAAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTGGTTTTTTTTTGAAAGATGCGCATTCTAACCTAGAGGTCAAC
GTTATGTATTTATTTATTTATTTATTTGGTTCCCTTCCTGCTCCAAGCTTCCACAGCTGC
CGCCATAGTTTTCTTTTCTCCTTTCCTCCTCTGACTTTGGGGACATTTGGGAGAGGGCTG
CAACGCTTGCTGTTTGTTGGTAGGGTGATGGGACTCGGGCGGGACAGCTGCTGCAGCTCC
CTGACTGCTGCAGGGCCCCCCCTCGCCTGCTTCCCCAAGTGGGTCTGGGTTCCGTGGGTG
ATGGGGCCGGGGCGTTGCTGACGTGTACATAGGATAGTCTATATGAAAAGCAGTTCTGGA
TGGTGTGCCTTCCGGATCCTCTCTGGGGCTGTGTTTTGAGCAGCATGTAGCCTGCTGGTT
TTATCTGAGTGAAATACTGTACAGGGGAATTAAAGAGATCTTATTTTTTTTTTTTTTATA
CTTGGCATTTTTTGAATAAAAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-458, - strand, RNAz p=0.579357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-458, - strand, RNAz p=0.579357

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-501, gnl|bosTau2|chr18 (2700182-2699691)
               

               
               7-501, gnl|Hg17|chr6 (37250692-37251168)
               

               
               7-501, gnl|Mm7|chr17 (27687550-27688044)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-501, gnl|bosTau2|chr18 (2700182-2699691)
               

               
               7-501, gnl|Hg17|chr6 (37250692-37251168)
               

               
               7-501, gnl|Mm7|chr17 (27687550-27688044)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ece (0.229305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	7-501, gnl\|bosTau2\|chr18 (2700182-2699691)
	7-501, gnl\|Hg17\|chr6 (37250692-37251168)
	7-501, gnl\|Mm7\|chr17 (27687550-27688044)

	ece (0.229305)
	fty (0.17584)
	duo (0.172801)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)