Non-Coding RNA Search

Ss1.1-rpgl19_n2.5

Sequence:


               
               CGTTCGAGGGAGGTTTTTGATGTAACTGCACTCTGATTAATTGGCTTACACCAATCCCTG
CCTTACGGTCAGTGGAAACCTTCGTGAAGTTCCATTGATGTGAAAGGGCCTTGTCCTAGC
TCCCTGGTCTGATCAGTGCTATCAGATGAACAAATAAGTGTGAATGTTTTATATTGAAAA
TGGAAATGATACATTTCTCTTGTTTTATGTTTTTCATGAGCTGTAGCATTTTTTTCTTAT
GGAAATAAGTGTTTCAGATGTCTCCATTTAGGGCAGATTCATGTACATTGTCATGTCATA
CCACCATCCTAGACGTGACTTCTGTGGATTTGAAATGGCACTTTTAATTTTATATATGAC
ACAAAACATTGAAATGTAAACACTACCATTAATTTAATGTATAAAACATTTGTTGTCAAA
CCAAGGGAAAAGCCACAGTTCACTTATGTGGAGTTTACTTTTTTTTTTATATGAATGTTT
GTTGTACTGTGTCTGAGTATAACTTCCCTAATGTCATTACTTTTACATACCAGATCTAAC
TGACCACTAACAGTACTGGGCATAACTTACTATCCTATGTTACATAACAAAACTCTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTCGAGGGAGGTTTTTGATGTAACTGCACTCTGATTAATTGGCTTACACCAATCCCTG
CCTTACGGTCAGTGGAAACCTTCGTGAAGTTCCATTGATGTGAAAGGGCCTTGTCCTAGC
TCCCTGGTCTGATCAGTGCTATCAGATGAACAAATAAGTGTGAATGTTTTATATTGAAAA
TGGAAATGATACATTTCTCTTGTTTTATGTTTTTCATGAGCTGTAGCATTTTTTTCTTAT
GGAAATAAGTGTTTCAGATGTCTCCATTTAGGGCAGATTCATGTACATTGTCATGTCATA
CCACCATCCTAGACGTGACTTCTGTGGATTTGAAATGGCACTTTTAATTTTATATATGAC
ACAAAACATTGAAATGTAAACACTACCATTAATTTAATGTATAAAACATTTGTTGTCAAA
CCAAGGGAAAAGCCACAGTTCACTTATGTGGAGTTTACTTTTTTTTTTATATGAATGTTT
GTTGTACTGTGTCTGAGTATAACTTCCCTAATGTCATTACTTTTACATACCAGATCTAAC
TGACCACTAACAGTACTGGGCATAACTTACTATCCTATGTTACATAACAAAACTCTAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-459, - strand, RNAz p=0.602833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-459, - strand, RNAz p=0.602833

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006141, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006141, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               6-600, gnl|bosTau2|chr18 (26695902-26695314)
               

               
               6-600, gnl|canFam2|chr5 (85573012-85572106)
               

               
               6-600, gnl|dasNov1|scaffold_11588 (46899-46023)
               

               
               6-600, gnl|echTel1|scaffold_295472 (5505-4615)
               

               
               6-600, gnl|galGal2|chr11 (11689168-11688261)
               

               
               6-600, gnl|hg17|chr16 (65313468-65314365)
               

               
               6-600, gnl|Hg17|chr16 (65314157-65313569)
               

               
               6-600, gnl|loxAfr1|scaffold_13417 (316-1232)
               

               
               6-600, gnl|mm7|chr8 (103018263-103019118)
               

               
               6-600, gnl|Mm7|chr8 (103018928-103018366)
               

               
               6-600, gnl|monDom2|scaffold_23 (20877764-20876804)
               

               
               6-600, gnl|oryCun1|scaffold_160232 (2365-1471)
               

               
               6-600, gnl|panTro1|chr18 (59553659-59554556)
               

               
               6-600, gnl|rheMac2|chr20 (64984868-64985763)
               

               
               6-600, gnl|rn3|chr19 (509452-508604)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-600, gnl|bosTau2|chr18 (26695902-26695314)
               

               
               6-600, gnl|canFam2|chr5 (85573012-85572106)
               

               
               6-600, gnl|dasNov1|scaffold_11588 (46899-46023)
               

               
               6-600, gnl|echTel1|scaffold_295472 (5505-4615)
               

               
               6-600, gnl|galGal2|chr11 (11689168-11688261)
               

               
               6-600, gnl|hg17|chr16 (65313468-65314365)
               

               
               6-600, gnl|Hg17|chr16 (65314157-65313569)
               

               
               6-600, gnl|loxAfr1|scaffold_13417 (316-1232)
               

               
               6-600, gnl|mm7|chr8 (103018263-103019118)
               

               
               6-600, gnl|Mm7|chr8 (103018928-103018366)
               

               
               6-600, gnl|monDom2|scaffold_23 (20877764-20876804)
               

               
               6-600, gnl|oryCun1|scaffold_160232 (2365-1471)
               

               
               6-600, gnl|panTro1|chr18 (59553659-59554556)
               

               
               6-600, gnl|rheMac2|chr20 (64984868-64985763)
               

               
               6-600, gnl|rn3|chr19 (509452-508604)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               csk (0.281492)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               fco (0.157208)
               

               
               pty (0.142714)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	6-600, gnl\|bosTau2\|chr18 (26695902-26695314)
	6-600, gnl\|canFam2\|chr5 (85573012-85572106)
	6-600, gnl\|dasNov1\|scaffold_11588 (46899-46023)
	6-600, gnl\|echTel1\|scaffold_295472 (5505-4615)
	6-600, gnl\|galGal2\|chr11 (11689168-11688261)
	6-600, gnl\|hg17\|chr16 (65313468-65314365)
	6-600, gnl\|Hg17\|chr16 (65314157-65313569)
	6-600, gnl\|loxAfr1\|scaffold_13417 (316-1232)
	6-600, gnl\|mm7\|chr8 (103018263-103019118)
	6-600, gnl\|Mm7\|chr8 (103018928-103018366)
	6-600, gnl\|monDom2\|scaffold_23 (20877764-20876804)
	6-600, gnl\|oryCun1\|scaffold_160232 (2365-1471)
	6-600, gnl\|panTro1\|chr18 (59553659-59554556)
	6-600, gnl\|rheMac2\|chr20 (64984868-64985763)
	6-600, gnl\|rn3\|chr19 (509452-508604)

	csk (0.281492)
	fco (0.157208)
	pty (0.142714)
	ese (0.126502)
	pgl (0.118483)
	ebs (0.118301)