Non-Coding RNA Search

Ss1.1-rpgl20_b22.5

Sequence:


               
               GGAACTCCGGGCATTTGACTGGGGCAGCGAGACCAAAAATCTGGAGAAAAGCAATCAGCC
AACTCCTGTAAGGTACAAAGTTAGAGACATGACGGTCCCTACGGCAATGTGGACTGGAGG
TCAGGACTGGCTTTCAAATCCAGAAGATGTGAGAACCCTGCTCTCCGAGGTGACCCACCT
CATCTACCATAAGAACATTCCCGAATGGGCTCATGCGGATTTCATTTGGGGTTTGGATGC
CCCTCACCGTATGTATAATGAAATCATACATCTGATGAAGCAGGAAGAGACCAGCCTTTC
CCAGGGAACTTTCGGTGTCAGCTTGTAAAGTCTCTGATACGAACAAGTCTTAGGAAAAAC
CTCATGGAAGATATGACCGGAAAATGGGGCCGGGATCTACAGATGGAGGATTTTAAAGAT
TTCCAGCATTGGAAGCCTAGTTTTTAGTAGAAGGGAGATAGTGAAAGGAAGGCAAAGATA
TAATATACATTCTTTCAGATTAACTGCCCTAGAACTGACATTTAATTTTCTTTCAATAAA
TTAAACTACTCGTGGAGTGAACATAGGTTTCCTGTGCTATTATATATTCTGCCATCTTAA
AGGGTAGGTTTTACGTGACAGCTAAAAATTATCTAGATTTTCTTTATGTCATTCAGGTAA
ACCTCCTTAAAACGTTTTTTTCTATGAGCCATTTTTTTGGAGTAACAAAGTGAAAGGACA
AATTGGGACAGAGGCAGAGGTCTTGAATCTCTGGATCGTTGTTGAATTTGAGAAAATAGT
CTAAACGTTTCTACCTTATTGCTACAGAAACATAGCACGACCTCAGGAAGCCACACTGCT
TTAACAGAAGAAAAAGAAAACTCAATGAATAATATAGAAGAAAAGGCCAAGTTTTATAGT
TTAGTGTCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACTCCGGGCATTTGACTGGGGCAGCGAGACCAAAAATCTGGAGAAAAGCAATCAGCC
AACTCCTGTAAGGTACAAAGTTAGAGACATGACGGTCCCTACGGCAATGTGGACTGGAGG
TCAGGACTGGCTTTCAAATCCAGAAGATGTGAGAACCCTGCTCTCCGAGGTGACCCACCT
CATCTACCATAAGAACATTCCCGAATGGGCTCATGCGGATTTCATTTGGGGTTTGGATGC
CCCTCACCGTATGTATAATGAAATCATACATCTGATGAAGCAGGAAGAGACCAGCCTTTC
CCAGGGAACTTTCGGTGTCAGCTTGTAAAGTCTCTGATACGAACAAGTCTTAGGAAAAAC
CTCATGGAAGATATGACCGGAAAATGGGGCCGGGATCTACAGATGGAGGATTTTAAAGAT
TTCCAGCATTGGAAGCCTAGTTTTTAGTAGAAGGGAGATAGTGAAAGGAAGGCAAAGATA
TAATATACATTCTTTCAGATTAACTGCCCTAGAACTGACATTTAATTTTCTTTCAATAAA
TTAAACTACTCGTGGAGTGAACATAGGTTTCCTGTGCTATTATATATTCTGCCATCTTAA
AGGGTAGGTTTTACGTGACAGCTAAAAATTATCTAGATTTTCTTTATGTCATTCAGGTAA
ACCTCCTTAAAACGTTTTTTTCTATGAGCCATTTTTTTGGAGTAACAAAGTGAAAGGACA
AATTGGGACAGAGGCAGAGGTCTTGAATCTCTGGATCGTTGTTGAATTTGAGAAAATAGT
CTAAACGTTTCTACCTTATTGCTACAGAAACATAGCACGACCTCAGGAAGCCACACTGCT
TTAACAGAAGAAAAAGAAAACTCAATGAATAATATAGAAGAAAAGGCCAAGTTTTATAGT
TTAGTGTCAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61840685|ref|XP_595458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61840685|ref|XP_595458.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-215, - strand, RNAz p=0.563017

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-215, - strand, RNAz p=0.563017

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               57-912, gnl|bosTau2|chr26 (35706829-35707665)
               

               
               57-912, gnl|Hg17|chr10 (90569967-90570799)
               

               
               57-912, gnl|Mm7|chr19 (33822362-33823214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-912, gnl|bosTau2|chr26 (35706829-35707665)
               

               
               57-912, gnl|Hg17|chr10 (90569967-90570799)
               

               
               57-912, gnl|Mm7|chr19 (33822362-33823214)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.408998)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               csk (0.140746)
               

               
               pgl (0.118483)

	57-912, gnl\|bosTau2\|chr26 (35706829-35707665)
	57-912, gnl\|Hg17\|chr10 (90569967-90570799)
	57-912, gnl\|Mm7\|chr19 (33822362-33823214)