Non-Coding RNA Search

Ss1.1-rpgl20_e7.5

Sequence:


               
               CCCCCACCCCATCCACATAGGATGCACCCAAACTATGGTCATGGGCATCATATTCATGTG
CCTCAGACTATGTCCTCACATCCTCGACAGGCTCCAGAGAGATCTGCCTGGGAACTGGGA
ATTGAAGCTGGAGTGACTGCAGCTACTTACACACCTGGAGCATTGCACCCTCACTTGGCC
CATTACCATGCACCCCCTCGACTACATCACTTACAATTAGGAGCTCTTCCTTTAATGGTT
CCTGACATGGCAGGCTATCCTCACATTCGTTATATTTCATCAGGTTTGGATGGAACATCA
TTCAGAGGTCCCTTCAGGGGCAATTTTGAGGAACTTATTCATTTGGAAGAAAGATTAGGA
AATGTTAATCGTGGAGCATCCCAGGGGACAATTGAAAGATGTACATATCCACATAAATAC
AAAAAGAGGAAACTGCACTGCAAACAAGATGGGGAAGAAGGGACTGAGGAAGACACAGAG
GAAAAATGTACTATCTGTTTGTCTATTTTAGAGGAAGGTGAAGATGTGAGACGCCTTCCC
TGTATGCACCTTTTCCACCAAGTGTGTGTTGACCAGTGGTTGATTACCAATAAGAAGTGC
CCCATATGCAGAGTGGACATTGAGGCCCAGCTGCCAAGTGAGAGTTGACACCATGTTTCA
GAACTCTTGCCCTCCCTCTCATTCCCACCCTCCTGGTACTGCAGTCAACCAAAGATGGCA
TGACTTACCTGCGCAGATTTGGAAGCCTTGAACTTAGAGTGCTGGCTCTGCTATATGGTA
CAACTAATGCTAGACGTACAGTTTATGTATACAGTTGATTTTGATGTATTTATAAAAGCC
TTTTTTTCTAGATTTGACATTTTTCCTGTATCATTTTACTGTATTTTTGCATGGTTCCTT
GTATTGCATTTCTTTGCACATATTATGGGCTTGTGACCCTAAACTTGCAGGCAAGATTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCACCCCATCCACATAGGATGCACCCAAACTATGGTCATGGGCATCATATTCATGTG
CCTCAGACTATGTCCTCACATCCTCGACAGGCTCCAGAGAGATCTGCCTGGGAACTGGGA
ATTGAAGCTGGAGTGACTGCAGCTACTTACACACCTGGAGCATTGCACCCTCACTTGGCC
CATTACCATGCACCCCCTCGACTACATCACTTACAATTAGGAGCTCTTCCTTTAATGGTT
CCTGACATGGCAGGCTATCCTCACATTCGTTATATTTCATCAGGTTTGGATGGAACATCA
TTCAGAGGTCCCTTCAGGGGCAATTTTGAGGAACTTATTCATTTGGAAGAAAGATTAGGA
AATGTTAATCGTGGAGCATCCCAGGGGACAATTGAAAGATGTACATATCCACATAAATAC
AAAAAGAGGAAACTGCACTGCAAACAAGATGGGGAAGAAGGGACTGAGGAAGACACAGAG
GAAAAATGTACTATCTGTTTGTCTATTTTAGAGGAAGGTGAAGATGTGAGACGCCTTCCC
TGTATGCACCTTTTCCACCAAGTGTGTGTTGACCAGTGGTTGATTACCAATAAGAAGTGC
CCCATATGCAGAGTGGACATTGAGGCCCAGCTGCCAAGTGAGAGTTGACACCATGTTTCA
GAACTCTTGCCCTCCCTCTCATTCCCACCCTCCTGGTACTGCAGTCAACCAAAGATGGCA
TGACTTACCTGCGCAGATTTGGAAGCCTTGAACTTAGAGTGCTGGCTCTGCTATATGGTA
CAACTAATGCTAGACGTACAGTTTATGTATACAGTTGATTTTGATGTATTTATAAAAGCC
TTTTTTTCTAGATTTGACATTTTTCCTGTATCATTTTACTGTATTTTTGCATGGTTCCTT
GTATTGCATTTCTTTGCACATATTATGGGCTTGTGACCCTAAACTTGCAGGCAAGATTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NSR1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NSR1_HUMAN

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               105-239, gnl|bosTau2|chr10 (38304141-38304007)
               

               
               105-239, gnl|Hg17|chr15 (57165144-57165278)
               

               
               105-239, gnl|Mm7|chr9 (70472837-70472703)
               


               
               326-426, gnl|bosTau2|chr10 (38298942-38298842)
               

               
               326-426, gnl|Hg17|chr15 (57170545-57170645)
               

               
               326-426, gnl|Mm7|chr9 (70462981-70462881)
               


               
               529-960, gnl|bosTau2|chr10 (38295890-38295457)
               

               
               529-960, gnl|Hg17|chr15 (57174272-57174703)
               

               
               529-960, gnl|Mm7|chr9 (70459059-70458623)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               105-239, gnl|bosTau2|chr10 (38304141-38304007)
               

               
               105-239, gnl|Hg17|chr15 (57165144-57165278)
               

               
               105-239, gnl|Mm7|chr9 (70472837-70472703)
               


               
               326-426, gnl|bosTau2|chr10 (38298942-38298842)
               

               
               326-426, gnl|Hg17|chr15 (57170545-57170645)
               

               
               326-426, gnl|Mm7|chr9 (70462981-70462881)
               


               
               529-960, gnl|bosTau2|chr10 (38295890-38295457)
               

               
               529-960, gnl|Hg17|chr15 (57174272-57174703)
               

               
               529-960, gnl|Mm7|chr9 (70459059-70458623)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	105-239, gnl\|bosTau2\|chr10 (38304141-38304007)
	105-239, gnl\|Hg17\|chr15 (57165144-57165278)
	105-239, gnl\|Mm7\|chr9 (70472837-70472703)

	326-426, gnl\|bosTau2\|chr10 (38298942-38298842)
	326-426, gnl\|Hg17\|chr15 (57170545-57170645)
	326-426, gnl\|Mm7\|chr9 (70462981-70462881)

	529-960, gnl\|bosTau2\|chr10 (38295890-38295457)
	529-960, gnl\|Hg17\|chr15 (57174272-57174703)
	529-960, gnl\|Mm7\|chr9 (70459059-70458623)