Non-Coding RNA Search

Ss1.1-rpgl20_g5.5

Sequence:


               
               GTACCTTCCTCTTCATGTTTGTTTTAAGCTCAGGTAAAGGTAACCCTCCTCTTTGTATGA
CTCCATTTTCCATTCAGGGTATAGTATTATTCAATAATTGGTTTTCTTTTTAATCTGGGC
AATAAATGGATGTTTCCAGATGGCCGCATGGGGGAGGCGGAGTGTATGATAAGATTAGCA
AGTTCTACCCTGAAAATGTCTTAGTAGCTCGGCAGGCATAAGATGAGGTTTAACAACTTT
CGTGGAAATTCCAGATTGACATTTCATGGGAAAAATGGACCCTCGTTCTCCTGGACGTGG
ATAAAGAAGTCTATAAATTAATGTGCAGCTTATAACATTCCAGAGGTTAAAAATAACTGA
TGTACGTATACCTCCTCAGTGTGACGCTTCAGATAACACTTTGACCTTTGGCACAGCTCT
GCTGTCACCAAGATGTATGGTGTGGAGTGTGGGTGAGGGGGTGGGCTTCCTGAGGCTTCC
GTTTGCTCTAACTTCTGGCAGCTCTTTGTAATTTTCGTGGCTTTGATAAATCAGGAACAA
CCGTGTTGAATGCAACTGGGATCTGGAAGACTTTGGGGTCTCCCAGGGAAGGAGGGATGG
ACTCAGGACTGTGTGGCCCCCGGGGGCGTGACACCCCAGTGTGTACAGCACAGCCAGAAT
ATGGGGCGCACATACCTCGTCAGGTGCTGGGTCCTTCTGCTCAAAATCACATCTACCTAA
AAAGGGAGTGTGGTGAGGACCCTCGGCCCTTTCACTAGGGTGGGTTTGACTTCGTGGTCA
CTGAGTTCTCTCAACTGCCTTTGTAAAAATCACTTTGAGTAGAATAAAGCCGGAGGAGCA
TATTTAGTCCCTATAATCATCTTTAGTGGTCCACTTGATATATTTGTAACATAGATTCAG
AACCTTTGGGGGGAAACCAGGATCATTTTGGTCTTTGGCTTAAGCGGTTGGTTGCTGCAT
GTGACAGGTGCACCAAGGCATGGATCAGTGTGGCATTTGGTGACAAGAAAAGCATTACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACCTTCCTCTTCATGTTTGTTTTAAGCTCAGGTAAAGGTAACCCTCCTCTTTGTATGA
CTCCATTTTCCATTCAGGGTATAGTATTATTCAATAATTGGTTTTCTTTTTAATCTGGGC
AATAAATGGATGTTTCCAGATGGCCGCATGGGGGAGGCGGAGTGTATGATAAGATTAGCA
AGTTCTACCCTGAAAATGTCTTAGTAGCTCGGCAGGCATAAGATGAGGTTTAACAACTTT
CGTGGAAATTCCAGATTGACATTTCATGGGAAAAATGGACCCTCGTTCTCCTGGACGTGG
ATAAAGAAGTCTATAAATTAATGTGCAGCTTATAACATTCCAGAGGTTAAAAATAACTGA
TGTACGTATACCTCCTCAGTGTGACGCTTCAGATAACACTTTGACCTTTGGCACAGCTCT
GCTGTCACCAAGATGTATGGTGTGGAGTGTGGGTGAGGGGGTGGGCTTCCTGAGGCTTCC
GTTTGCTCTAACTTCTGGCAGCTCTTTGTAATTTTCGTGGCTTTGATAAATCAGGAACAA
CCGTGTTGAATGCAACTGGGATCTGGAAGACTTTGGGGTCTCCCAGGGAAGGAGGGATGG
ACTCAGGACTGTGTGGCCCCCGGGGGCGTGACACCCCAGTGTGTACAGCACAGCCAGAAT
ATGGGGCGCACATACCTCGTCAGGTGCTGGGTCCTTCTGCTCAAAATCACATCTACCTAA
AAAGGGAGTGTGGTGAGGACCCTCGGCCCTTTCACTAGGGTGGGTTTGACTTCGTGGTCA
CTGAGTTCTCTCAACTGCCTTTGTAAAAATCACTTTGAGTAGAATAAAGCCGGAGGAGCA
TATTTAGTCCCTATAATCATCTTTAGTGGTCCACTTGATATATTTGTAACATAGATTCAG
AACCTTTGGGGGGAAACCAGGATCATTTTGGTCTTTGGCTTAAGCGGTTGGTTGCTGCAT
GTGACAGGTGCACCAAGGCATGGATCAGTGTGGCATTTGGTGACAAGAAAAGCATTACCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               533-649, - strand, RNAz p=0.956681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               533-649, - strand, RNAz p=0.956681

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1020, gnl|bosTau2|chr13 (49691000-49691974)
               

               
               10-1020, gnl|Hg17|chr20 (36638573-36639558)
               

               
               10-1020, gnl|Mm7|chr2 (158237936-158238920)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1020, gnl|bosTau2|chr13 (49691000-49691974)
               

               
               10-1020, gnl|Hg17|chr20 (36638573-36639558)
               

               
               10-1020, gnl|Mm7|chr2 (158237936-158238920)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)
               

               
               cty (0.10408)

	10-1020, gnl\|bosTau2\|chr13 (49691000-49691974)
	10-1020, gnl\|Hg17\|chr20 (36638573-36639558)
	10-1020, gnl\|Mm7\|chr2 (158237936-158238920)