Non-Coding RNA Search

Ss1.1-rpgl21_a24.5

Sequence:


               
               ATATGTCCATAGCCTGGTGGATTTGTATGCAATGCACTACATTCATGCATTCTGATAGCA
TTTCATTAATTTTTATTTGAAATGGGAGAGGAAGGATAATATGATCCCCAATGAGTTATC
TCTCACAGAAAAGCCAAGACTTTTTAATTTTTATTACATATATAGTAGTTTGATATCATC
AGTTTCCGTTCTGAATTTTGTATATTATTAGGATAGAACATTGCTTAACCCTGTTTTAAA
AATACATTTACATTAACATGATACTCAAATTATTGGATATTTTAAAAAGTATATCTGACA
TAATTTTCTTCATCAATTACATTATACAGTCAAGTTAGCTTTTTAGCCCAGATTTCAAAT
AGTGGAGGAAGAAAGAAACAATATGTGAGGGTAAAACCTCCTCAAAGAATATCAAAACAC
AGAGTGTAAACACACATGCTTGCGAACAAACATTAGTCGTGAAATCCCTATAGCAGCAAG
TCACTGGATTTTTCTCTGTCAGCGCGCGTGTCAGCTGCCAAAGAATAGACTTAACTGAAG
AAGTGCCCACATGCTGGCAGGGGCCGGCCCACTCTGGCCAGCCAGATACTGCTAGATTGT
AATATTTAAGGTCGAATTTCGACCTGTGGTACACAGCTGTGCTGTGGCTCAGTCAGCAAC
CTCAGAACTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGTCCATAGCCTGGTGGATTTGTATGCAATGCACTACATTCATGCATTCTGATAGCA
TTTCATTAATTTTTATTTGAAATGGGAGAGGAAGGATAATATGATCCCCAATGAGTTATC
TCTCACAGAAAAGCCAAGACTTTTTAATTTTTATTACATATATAGTAGTTTGATATCATC
AGTTTCCGTTCTGAATTTTGTATATTATTAGGATAGAACATTGCTTAACCCTGTTTTAAA
AATACATTTACATTAACATGATACTCAAATTATTGGATATTTTAAAAAGTATATCTGACA
TAATTTTCTTCATCAATTACATTATACAGTCAAGTTAGCTTTTTAGCCCAGATTTCAAAT
AGTGGAGGAAGAAAGAAACAATATGTGAGGGTAAAACCTCCTCAAAGAATATCAAAACAC
AGAGTGTAAACACACATGCTTGCGAACAAACATTAGTCGTGAAATCCCTATAGCAGCAAG
TCACTGGATTTTTCTCTGTCAGCGCGCGTGTCAGCTGCCAAAGAATAGACTTAACTGAAG
AAGTGCCCACATGCTGGCAGGGGCCGGCCCACTCTGGCCAGCCAGATACTGCTAGATTGT
AATATTTAAGGTCGAATTTCGACCTGTGGTACACAGCTGTGCTGTGGCTCAGTCAGCAAC
CTCAGAACTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-672, - strand, RNAz p=0.99174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-672, - strand, RNAz p=0.99174

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               531-626, + strand, RNAmicro p=0.955139

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               531-626, + strand, RNAmicro p=0.955139

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               513-672, DB566517 RIKEN full-length enriched human cDNA library, 
(dbj|DB566517.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DB574604 RIKEN full-length enriched human cDNA library, 
(dbj|DB574604.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO588134.1|), blast E-value=0, identity=100% 
               

               
               513-672, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO682899.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO689686.1|), blast E-value=0, identity=100% 
               

               
               513-672, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone 
(gb|DN349575.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               513-672, DB566517 RIKEN full-length enriched human cDNA library, 
(dbj|DB566517.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DB574604 RIKEN full-length enriched human cDNA library, 
(dbj|DB574604.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence 
(gb|CO588134.1|), blast E-value=0, identity=100% 
               

               
               513-672, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO682899.1|), blast E-value=0, identity=99.38% 
               

               
               513-672, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO689686.1|), blast E-value=0, identity=100% 
               

               
               513-672, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone 
(gb|DN349575.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr21 (33426596-33427266)
               

               
               1-672, gnl|Hg17|chr14 (38938096-38937449)
               

               
               1-672, gnl|Mm7|chr12 (57136927-57136286)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr21 (33426596-33427266)
               

               
               1-672, gnl|Hg17|chr14 (38938096-38937449)
               

               
               1-672, gnl|Mm7|chr12 (57136927-57136286)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               lin (0.145603)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	513-672, DB566517 RIKEN full-length enriched human cDNA library, (dbj\|DB566517.1\|), blast E-value=0, identity=99.38%
	513-672, DB574604 RIKEN full-length enriched human cDNA library, (dbj\|DB574604.1\|), blast E-value=0, identity=99.38%
	513-672, DG2-19j24 DG2-brain Canis familiaris cDNA 3', mRNA sequence (gb\|CO588134.1\|), blast E-value=0, identity=100%
	513-672, DG11-160j18 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO682899.1\|), blast E-value=0, identity=99.38%
	513-672, DG11-262o15 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO689686.1\|), blast E-value=0, identity=100%
	513-672, LIB3579-016-Q1-K1-G12 LIB3579 Canis familiaris cDNA clone (gb\|DN349575.1\|), blast E-value=0, identity=100%

	1-672, gnl\|bosTau2\|chr21 (33426596-33427266)
	1-672, gnl\|Hg17\|chr14 (38938096-38937449)
	1-672, gnl\|Mm7\|chr12 (57136927-57136286)

	lin (0.145603)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)
	cbl (0.114797)
	eje (0.0988338)